Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MHH88_RS05555 Genome accession   NZ_CP150264
Coordinates   1177286..1178545 (+) Length   419 a.a.
NCBI ID   WP_339261756.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL K6-3209     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1172286..1183545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH88_RS05525 (MHH88_05525) - 1172366..1173664 (+) 1299 WP_069510059.1 pitrilysin family protein -
  MHH88_RS05530 (MHH88_05530) - 1173664..1174392 (+) 729 WP_339261755.1 SDR family oxidoreductase -
  MHH88_RS05535 (MHH88_05535) - 1174441..1174698 (+) 258 WP_024361966.1 DUF3243 domain-containing protein -
  MHH88_RS05540 (MHH88_05540) - 1174926..1175714 (+) 789 WP_103977636.1 DUF3388 domain-containing protein -
  MHH88_RS05545 (MHH88_05545) - 1175731..1176642 (+) 912 WP_172583013.1 RodZ domain-containing protein -
  MHH88_RS05550 (MHH88_05550) pgsA 1176690..1177268 (+) 579 WP_024361963.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MHH88_RS05555 (MHH88_05555) cinA 1177286..1178545 (+) 1260 WP_339261756.1 competence/damage-inducible protein A Machinery gene
  MHH88_RS05560 (MHH88_05560) recA 1178800..1179864 (+) 1065 WP_069510054.1 recombinase RecA Machinery gene
  MHH88_RS05565 (MHH88_05565) rny 1180311..1181870 (+) 1560 WP_069510052.1 ribonuclease Y -
  MHH88_RS05570 (MHH88_05570) - 1182208..1182906 (+) 699 WP_339261757.1 Wzz/FepE/Etk N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45233.79 Da        Isoelectric Point: 5.5864

>NTDB_id=968639 MHH88_RS05555 WP_339261756.1 1177286..1178545(+) (cinA) [Lysinibacillus sp. FSL K6-3209]
MNAEILAVGSELLLGQITNTNAKFISNQLSELGINVFYHTVVGDNSKRLEEAISIAEARANLIIFSGGLGPTKDDLTKET
IARHLGVDLVFDQVALTYIEEFFAKRGRSMTENNRKQALVLAGSEVLANHHGMAPGMILTKDNCTYILLPGPPKELEPMF
QFEAKPKLGKMLNDGGVIVSHVMRFYGIGEAELEVRVQDILDTQTNPTVAPLAADGEVTLRVTAKAQSEHEAHQLIAAKV
AEIRAIVGDYQYGVNDDSLASKTVEMLQDNNLTIAAAESLTAGLFQSELAEIPGVGNVLIGGVVTYTEDAKVKQLGISQQ
LLDTHGIVSSECAAAMASAVRQKFGTSIGIGLTGAAGPTAHDHQPVGTVWIGIAIGDEEPITYLLHLSGMRNTNRLRAVK
FTCHYLMQQLEVRGYKKRM

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=968639 MHH88_RS05555 WP_339261756.1 1177286..1178545(+) (cinA) [Lysinibacillus sp. FSL K6-3209]
ATGAATGCTGAAATCCTTGCAGTTGGCTCAGAGTTATTACTTGGACAGATTACAAATACAAATGCAAAATTTATTTCAAA
TCAGCTATCTGAATTAGGAATTAATGTGTTTTATCATACCGTTGTTGGTGACAATTCAAAACGGTTAGAAGAAGCCATTA
GCATAGCGGAAGCGCGCGCTAATCTCATTATTTTTTCAGGAGGCTTAGGTCCAACGAAGGATGATTTGACGAAGGAGACG
ATTGCTCGTCATCTTGGGGTAGACCTTGTATTCGATCAAGTTGCATTAACATACATTGAGGAGTTTTTTGCTAAACGAGG
CCGTTCAATGACGGAAAATAATCGCAAGCAGGCGCTAGTATTAGCAGGTAGTGAGGTGCTTGCTAATCATCATGGTATGG
CACCGGGAATGATTTTAACAAAAGATAATTGCACTTATATTTTACTTCCGGGCCCACCAAAAGAATTAGAGCCGATGTTC
CAATTTGAAGCGAAGCCAAAGCTTGGTAAAATGCTCAACGATGGCGGAGTGATTGTGTCTCACGTAATGCGTTTTTATGG
TATTGGAGAAGCAGAGTTAGAAGTGCGTGTGCAGGATATTTTAGATACACAAACCAATCCAACGGTTGCCCCGCTAGCAG
CTGATGGAGAGGTCACTTTACGCGTAACAGCAAAGGCTCAATCAGAGCACGAAGCGCATCAGTTGATTGCTGCAAAAGTG
GCAGAAATTCGTGCTATTGTTGGCGACTATCAATATGGCGTAAATGATGACTCACTTGCCTCAAAAACGGTGGAAATGTT
GCAGGACAATAATTTAACGATTGCTGCGGCAGAAAGTTTAACAGCTGGTTTATTTCAATCAGAGCTGGCTGAAATACCAG
GGGTAGGCAATGTGCTCATTGGAGGAGTAGTGACCTATACCGAAGATGCGAAGGTCAAGCAGCTTGGCATTTCTCAACAA
TTACTAGATACGCATGGTATTGTGAGCAGTGAATGTGCAGCGGCAATGGCTAGTGCAGTACGTCAAAAATTTGGTACAAG
TATCGGTATCGGGCTAACAGGTGCGGCTGGTCCTACGGCACATGACCATCAGCCGGTAGGAACGGTATGGATTGGTATTG
CAATAGGTGACGAAGAGCCAATTACGTATTTACTTCACTTATCCGGTATGCGCAATACAAACCGATTGCGTGCCGTGAAG
TTTACTTGTCACTATTTAATGCAGCAATTGGAAGTACGAGGTTACAAGAAACGTATGTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.427

98.329

0.516
  cinA Streptococcus mitis SK321

45.953

91.408

0.42
  cinA Streptococcus pneumoniae TIGR4

45.953

91.408

0.42
  cinA Streptococcus pneumoniae Rx1

45.953

91.408

0.42
  cinA Streptococcus pneumoniae R6

45.953

91.408

0.42
  cinA Streptococcus pneumoniae D39

45.692

91.408

0.418
  cinA Streptococcus mitis NCTC 12261

45.431

91.408

0.415
  cinA Streptococcus mutans UA159

45.503

90.215

0.411
  cinA Streptococcus suis isolate S10

40.212

90.215

0.363

Multiple sequence alignment