Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OO774_RS02580 Genome accession   NZ_AP026763
Coordinates   536461..537504 (+) Length   347 a.a.
NCBI ID   WP_264904332.1    Uniprot ID   -
Organism   Vibrio sp. STUT-A11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 531461..542504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO774_RS02565 (VspSTUT11_04350) rpoS 531852..532838 (+) 987 WP_264904328.1 RNA polymerase sigma factor RpoS Regulator
  OO774_RS02570 (VspSTUT11_04360) mutS 533133..535694 (-) 2562 WP_264904329.1 DNA mismatch repair protein MutS -
  OO774_RS02575 (VspSTUT11_04370) pncC 535779..536270 (+) 492 WP_264904330.1 nicotinamide-nucleotide amidase -
  OO774_RS02580 (VspSTUT11_04380) recA 536461..537504 (+) 1044 WP_264904332.1 recombinase RecA Machinery gene
  OO774_RS02585 (VspSTUT11_04390) recX 537625..538092 (+) 468 WP_264904334.1 recombination regulator RecX -
  OO774_RS02590 (VspSTUT11_04400) alaS 538235..540817 (+) 2583 WP_264904336.1 alanine--tRNA ligase -
  OO774_RS02595 (VspSTUT11_04410) - 541014..542201 (+) 1188 WP_264904337.1 aspartate kinase -
  OO774_RS02600 (VspSTUT11_04420) csrA 542295..542492 (+) 198 WP_004415691.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37423.86 Da        Isoelectric Point: 5.0726

>NTDB_id=96802 OO774_RS02580 WP_264904332.1 536461..537504(+) (recA) [Vibrio sp. STUT-A11]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGRGFNREGELVDLGVKHKLVEKAGAWYSYNGDKIGQGKANACNYLREHTEVAQTIDK
TLREMLLAPAVAEPEGGEVPEQKEEEF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=96802 OO774_RS02580 WP_264904332.1 536461..537504(+) (recA) [Vibrio sp. STUT-A11]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAACAATTCGGTAAAGGCTCTATCATGCG
CCTTGGCGATAACCGCGCAATGGATGTAGAAACCATCTCAACGGGTTCTCTTTCTCTTGATATTGCTTTGGGTGCTGGTG
GCTTACCAATGGGTCGTATTGTTGAAGTATACGGTCCAGAGTCTTCAGGTAAAACAACGCTGACGTTGGAATTGATTGCA
GCAGCACAGCGTGAAGGCAAAACTTGTGCGTTTATCGATGCGGAACACGCTCTGGATCCTGTATACGCGAAAAAACTTGG
CGTAGATATCGATGCGCTATTGGTTTCTCAGCCTGATACGGGTGAGCAAGCGCTGGAAATTTGTGACGCATTAGCGCGCT
CTGGTGCTATCGACGTAATGGTTGTCGATTCAGTTGCTGCACTAACGCCAAAAGCGGAAATCGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTTCAAGCGCGTATGCTATCTCAGGCGATGCGTAAGCTAACAGGTAACCTGAAGCAGTCAAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGGAACCCAGAAACCACCACTGGCGGTAACGCAC
TTAAATTCTATGCATCGGTTCGTCTTGATATCCGTCGTACTGGCGCAATCAAAGAAGGCGACGAAGTTGTGGGTAACGAA
ACTCGCATCAAAGTGGTTAAGAACAAGATTGCGGCTCCATTTAAAGAAGCAAATACACAGATTATGTACGGCCGAGGCTT
TAACCGTGAAGGTGAGCTAGTGGATTTGGGTGTGAAGCACAAACTGGTTGAGAAAGCGGGCGCTTGGTACAGCTACAATG
GCGACAAGATCGGTCAGGGTAAAGCAAACGCTTGTAATTACCTGCGTGAGCATACAGAAGTTGCTCAGACTATCGACAAG
ACACTGCGTGAGATGCTTTTAGCTCCGGCAGTAGCTGAGCCAGAAGGCGGTGAAGTGCCAGAGCAGAAAGAAGAAGAGTT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

89.235

100

0.908
  recA Vibrio cholerae strain A1552

89.235

100

0.908
  recA Acinetobacter baumannii D1279779

71.965

99.712

0.718
  recA Pseudomonas stutzeri DSM 10701

74.312

94.236

0.7
  recA Acinetobacter baylyi ADP1

73.636

95.101

0.7
  recA Glaesserella parasuis strain SC1401

70.062

93.372

0.654
  recA Neisseria gonorrhoeae MS11

64.655

100

0.648
  recA Neisseria gonorrhoeae MS11

64.655

100

0.648
  recA Neisseria gonorrhoeae strain FA1090

64.655

100

0.648
  recA Ralstonia pseudosolanacearum GMI1000

70.418

89.625

0.631
  recA Helicobacter pylori strain NCTC11637

59.706

97.983

0.585
  recA Helicobacter pylori 26695

59.412

97.983

0.582
  recA Streptococcus pneumoniae Rx1

62.229

93.084

0.579
  recA Streptococcus pneumoniae TIGR4

62.229

93.084

0.579
  recA Streptococcus pneumoniae R6

62.229

93.084

0.579
  recA Streptococcus pneumoniae D39

62.229

93.084

0.579
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.162

94.236

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.507

0.576
  recA Streptococcus mitis SK321

61.3

93.084

0.571
  recA Streptococcus mitis NCTC 12261

60.991

93.084

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.145

91.354

0.568
  recA Streptococcus pyogenes NZ131

60.615

93.66

0.568
  recA Lactococcus lactis subsp. cremoris KW2

60.372

93.084

0.562
  recA Streptococcus mutans UA159

60

93.66

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

60.436

92.507

0.559
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.258

95.965

0.559

Multiple sequence alignment