Detailed information NTG0096800

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OO774_RS02565
• Genome accession: NZ_AP026763
• Coordinates: 531852..532838 (+)
• Length: 328 a.a.
• NCBI ID: WP_264904328.1
• Uniprot ID: -
• Organism: Vibrio sp. STUT-A11
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 526852..537838

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OO774_RS02530 (VspSTUT11_04280)	ftsB	526863..527144 (+)	282	WP_014232984.1	cell division protein FtsB	-
OO774_RS02535 (VspSTUT11_04290)	ispD	527146..527853 (+)	708	WP_264904319.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OO774_RS02540 (VspSTUT11_04300)	ispF	527867..528346 (+)	480	WP_264904320.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OO774_RS02545 (VspSTUT11_04310)	truD	528389..529432 (+)	1044	WP_264904321.1	tRNA pseudouridine(13) synthase TruD	-
OO774_RS02550 (VspSTUT11_04320)	surE	529462..530208 (+)	747	WP_264906047.1	5'/3'-nucleotidase SurE	-
OO774_RS02555 (VspSTUT11_04330)	-	530208..530834 (+)	627	WP_264904324.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OO774_RS02560 (VspSTUT11_04340)	-	530848..531771 (+)	924	WP_264904326.1	peptidoglycan DD-metalloendopeptidase family protein	-
OO774_RS02565 (VspSTUT11_04350)	rpoS	531852..532838 (+)	987	WP_264904328.1	RNA polymerase sigma factor RpoS	Regulator
OO774_RS02570 (VspSTUT11_04360)	mutS	533133..535694 (-)	2562	WP_264904329.1	DNA mismatch repair protein MutS	-
OO774_RS02575 (VspSTUT11_04370)	pncC	535779..536270 (+)	492	WP_264904330.1	nicotinamide-nucleotide amidase	-
OO774_RS02580 (VspSTUT11_04380)	recA	536461..537504 (+)	1044	WP_264904332.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37339.26 Da
• Isoelectric Point: 4.7299

>NTDB_id=96800 OO774_RS02565 WP_264904328.1 531852..532838(+) (rpoS) [Vibrio sp. STUT-A11]
MSISNTVTKVEEFEFDDESVKTVASQLGKSSSTESKAAPREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDGNNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLTME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=96800 OO774_RS02565 WP_264904328.1 531852..532838(+) (rpoS) [Vibrio sp. STUT-A11]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGAATTTGACGATGAGTCAGTGAAGACCGTTGCCAGTCAACT
CGGAAAATCATCATCCACAGAAAGCAAAGCTGCTCCGCGTGAAGAATTTGATGCGAGCAACAAAAGCTTAGATGCAACCC
AATTGTATTTAGGTGAAATTGGCTTCTCACCTCTACTCACCGCGGAAGAAGAAGTGCTGTATGCCCGACGTGCATTACGT
GGCGATGAAGCTGCCCGTAAGCGCATGATCGAAAGTAACTTGCGCTTGGTGGTAAAAATTTCTCGCCGTTACAGCAACCG
TGGTCTGGCGCTTCTGGATCTTATCGAGGAAGGTAACCTAGGCTTGATCCGCGCCGTTGAGAAGTTCGATCCTGAACGCG
GTTTTCGATTCTCTACTTATGCGACATGGTGGATTCGACAAACGATCGAACGTGCGTTGATGAACCAAACCCGTACTATT
CGTTTACCGATTCACGTTGTGAAAGAGCTGAACATTTATCTACGCACCGCAAGGGAACTTTCTCAGAAGCTCGATCACGA
ACCAACTGCCGAAGAGATTGCAGCGCAACTCGATATTCCAGTTGAAGATGTCAGCAAAATGCTTCGCCTGAATGAGCGTA
TAAGTTCTGTTGACACGCCAATCGGTGGTGATGGTGAAAAAGCACTACTCGATATCATTCCTGATGGAAATAACTCAGAT
CCGGAAGTTTCGACACAAGATGACGATATCAAGTCATCTCTGATTCATTGGCTTGAAGAGCTGAACCCGAAACAGAAAGA
AGTGCTGGCTCGTCGTTTTGGTTTATTAGGTTATGAACCTTCAACGCTGGAAGAAGTAGGGCGTGAAATTGGACTCACTC
GTGAACGCGTTCGCCAGATCCAAGTGGAAGGTCTACGTCGTCTACGCGAAGTATTGATTAAACAAGGTCTGACTATGGAA
AACTTGTTTAACGTCGAAGATGATTAG

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854