Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MKY07_RS05295 Genome accession   NZ_CP150208
Coordinates   1105810..1106883 (+) Length   357 a.a.
NCBI ID   WP_339264003.1    Uniprot ID   -
Organism   Solibacillus sp. FSL W7-1472     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1100810..1111883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY07_RS05270 (MKY07_05270) - 1101185..1101442 (+) 258 WP_008403201.1 DUF3243 domain-containing protein -
  MKY07_RS05275 (MKY07_05275) - 1101710..1102498 (+) 789 WP_008403200.1 DUF3388 domain-containing protein -
  MKY07_RS05280 (MKY07_05280) - 1102553..1103455 (+) 903 WP_231918688.1 RodZ domain-containing protein -
  MKY07_RS05285 (MKY07_05285) pgsA 1103502..1104080 (+) 579 WP_008403198.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MKY07_RS05290 (MKY07_05290) cinA 1104384..1105643 (+) 1260 WP_339264002.1 competence/damage-inducible protein A Machinery gene
  MKY07_RS05295 (MKY07_05295) recA 1105810..1106883 (+) 1074 WP_339264003.1 recombinase RecA Machinery gene
  MKY07_RS05300 (MKY07_05300) rny 1107613..1109166 (+) 1554 WP_008403194.1 ribonuclease Y -
  MKY07_RS05305 (MKY07_05305) - 1109430..1110194 (+) 765 WP_339264004.1 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38858.04 Da        Isoelectric Point: 4.7620

>NTDB_id=966395 MKY07_RS05295 WP_339264003.1 1105810..1106883(+) (recA) [Solibacillus sp. FSL W7-1472]
MSDRKAALDMALKQIEKQFGKGSVMKLGENSNRHMETTSSGSIAIDAALGIGGYPRGRIVEVYGPESSGKTTVTLHAIAE
IQANGGTAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGVINKSNTLAIFINQVREKIGVMFGNPETTTGGRALKFYSSIRLEVRRGEAIKQGTEIIGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIVDIGAELDIIQKSGSWYSYNSERIGQGRENVKQFFKENPAIKEEVTEK
IRQHFGIGELGYTIGANDTTEEELDELELFEDEKDKE

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=966395 MKY07_RS05295 WP_339264003.1 1105810..1106883(+) (recA) [Solibacillus sp. FSL W7-1472]
TTGAGCGATCGTAAAGCAGCATTAGATATGGCGTTAAAACAAATAGAAAAACAATTCGGTAAAGGTTCTGTCATGAAGTT
AGGTGAAAACTCGAACCGTCATATGGAGACAACTTCATCAGGCTCTATCGCAATTGATGCAGCATTAGGTATAGGCGGCT
ACCCGCGCGGACGTATTGTAGAAGTTTACGGACCAGAATCATCTGGTAAAACAACAGTTACATTACATGCCATCGCAGAA
ATTCAGGCAAACGGCGGTACAGCAGCGTTTATCGATGCTGAGCACGCACTTGACCCGGTATATGCACAAAAATTAGGCGT
TAACATTGACGAATTATTATTATCACAGCCGGATACAGGTGAACAAGCACTTGAAATCGCAGAAGCATTAGTACGTTCTG
GCGCGATTGATATTATCGTAATCGACTCTGTAGCAGCATTAGTGCCAAAAGCCGAGATCGAGGGCGAAATGGGTGACTCG
CACATGGGTCTCCAAGCGCGTTTAATGTCACAGGCATTACGTAAATTATCAGGTGTTATTAATAAATCGAATACGCTTGC
TATCTTCATCAACCAAGTTCGTGAAAAAATCGGTGTTATGTTCGGTAACCCGGAAACAACAACAGGTGGACGTGCCCTTA
AATTCTACTCTTCTATCCGTTTAGAAGTACGACGCGGTGAAGCGATTAAGCAAGGTACAGAAATTATCGGTAACAAAACA
AAAATCAAAGTCGTAAAAAATAAAGTAGCACCACCATTCCGTACAGCAGAAGTGGATATTATGTACGGCGAAGGGATTTC
AAAAGAAGGCGAAATCGTCGACATCGGTGCAGAACTGGATATCATCCAAAAGAGCGGTTCTTGGTATTCATACAACAGCG
AACGAATCGGCCAAGGTCGTGAAAATGTAAAACAATTCTTCAAAGAAAACCCTGCAATCAAAGAAGAAGTGACAGAAAAA
ATCCGTCAACACTTCGGTATCGGCGAACTAGGCTACACAATCGGTGCCAACGATACAACTGAAGAAGAACTGGACGAACT
AGAACTATTTGAAGACGAAAAAGATAAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.651

91.597

0.748
  recA Latilactobacillus sakei subsp. sakei 23K

67.042

99.44

0.667
  recA Neisseria gonorrhoeae MS11

65.517

97.479

0.639
  recA Neisseria gonorrhoeae MS11

65.517

97.479

0.639
  recA Neisseria gonorrhoeae strain FA1090

65.517

97.479

0.639
  recA Streptococcus mutans UA159

64.943

97.479

0.633
  recA Streptococcus pyogenes NZ131

64.103

98.319

0.63
  recA Acinetobacter baylyi ADP1

63.897

97.759

0.625
  recA Streptococcus pneumoniae R6

65.152

92.437

0.602
  recA Streptococcus mitis NCTC 12261

65.152

92.437

0.602
  recA Streptococcus pneumoniae Rx1

65.152

92.437

0.602
  recA Streptococcus pneumoniae D39

65.152

92.437

0.602
  recA Streptococcus pneumoniae TIGR4

65.152

92.437

0.602
  recA Streptococcus mitis SK321

64.848

92.437

0.599
  recA Ralstonia pseudosolanacearum GMI1000

64.939

91.877

0.597
  recA Lactococcus lactis subsp. cremoris KW2

64.545

92.437

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.83

92.157

0.588
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.015

90.476

0.588
  recA Vibrio cholerae strain A1552

65.015

90.476

0.588
  recA Acinetobacter baumannii D1279779

65.015

90.476

0.588
  recA Glaesserella parasuis strain SC1401

64.907

90.196

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.577

91.317

0.571
  recA Helicobacter pylori strain NCTC11637

62.195

91.877

0.571
  recA Helicobacter pylori 26695

61.89

91.877

0.569
  recA Pseudomonas stutzeri DSM 10701

62.848

90.476

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.25

89.636

0.549

Multiple sequence alignment