Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MKY07_RS05290 Genome accession   NZ_CP150208
Coordinates   1104384..1105643 (+) Length   419 a.a.
NCBI ID   WP_339264002.1    Uniprot ID   -
Organism   Solibacillus sp. FSL W7-1472     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1099384..1110643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY07_RS05265 (MKY07_05265) - 1100409..1101137 (+) 729 WP_339264001.1 SDR family oxidoreductase -
  MKY07_RS05270 (MKY07_05270) - 1101185..1101442 (+) 258 WP_008403201.1 DUF3243 domain-containing protein -
  MKY07_RS05275 (MKY07_05275) - 1101710..1102498 (+) 789 WP_008403200.1 DUF3388 domain-containing protein -
  MKY07_RS05280 (MKY07_05280) - 1102553..1103455 (+) 903 WP_231918688.1 RodZ domain-containing protein -
  MKY07_RS05285 (MKY07_05285) pgsA 1103502..1104080 (+) 579 WP_008403198.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MKY07_RS05290 (MKY07_05290) cinA 1104384..1105643 (+) 1260 WP_339264002.1 competence/damage-inducible protein A Machinery gene
  MKY07_RS05295 (MKY07_05295) recA 1105810..1106883 (+) 1074 WP_339264003.1 recombinase RecA Machinery gene
  MKY07_RS05300 (MKY07_05300) rny 1107613..1109166 (+) 1554 WP_008403194.1 ribonuclease Y -
  MKY07_RS05305 (MKY07_05305) - 1109430..1110194 (+) 765 WP_339264004.1 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45824.45 Da        Isoelectric Point: 4.8186

>NTDB_id=966394 MKY07_RS05290 WP_339264002.1 1104384..1105643(+) (cinA) [Solibacillus sp. FSL W7-1472]
MNAEIIAVGSELLLGQIANTNAKFISSQLSELGINVYYHTVVGDNEARLLEAIKIAEQRADVIIFSGGLGPTKDDLTKEA
IAKHLNRTLVFDETALFAIEEFFSKQRRPMTENNRKQALVLDGCEVLLNQHGMAPGMFLEENDRIYILLPGPPKELEPMF
QYETKPKLAALLHDGGVILSHVLRFYGIGEADLETRIQSILEEQTNPTVAPLASDGEVTLRITAKAQNEQQAFRLIELKK
REILDIVGEYYYGVNDESLGFKLVQMLLENELTVSAAESLTAGLFQSELAEIPGVGSALIGGVVTYTKEAKIKHLGVSGE
LLDEKGIVSSECAAAMATQVREKFGTDIGVGLTGAAGPGDHDGQPAGSIWVGIKIGDTEPLTYRLQLTGSRNTNRIRAVK
FTFSYLMRELANQGYKKLI

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=966394 MKY07_RS05290 WP_339264002.1 1104384..1105643(+) (cinA) [Solibacillus sp. FSL W7-1472]
ATGAATGCAGAAATTATAGCGGTAGGATCGGAATTATTATTAGGACAAATCGCCAACACGAATGCGAAATTTATTTCGAG
CCAGCTTTCGGAACTTGGCATTAATGTTTATTATCATACAGTTGTAGGAGATAACGAGGCGCGGCTACTAGAGGCGATCA
AAATTGCGGAACAGCGCGCGGATGTAATTATTTTCTCAGGTGGTTTAGGTCCGACAAAGGATGATCTGACGAAGGAAGCG
ATTGCGAAGCATTTGAATCGTACGTTAGTGTTTGATGAAACGGCGCTGTTTGCGATTGAGGAATTTTTCTCGAAGCAAAG
ACGACCGATGACGGAAAACAACCGAAAACAGGCGCTAGTACTGGATGGCTGCGAGGTCTTGTTGAATCAGCATGGGATGG
CACCGGGGATGTTTTTGGAGGAAAATGACCGCATTTATATTTTACTGCCGGGTCCGCCAAAAGAACTTGAGCCGATGTTC
CAATATGAAACGAAGCCAAAACTTGCGGCACTTTTACATGACGGCGGCGTAATTTTATCGCATGTACTACGTTTTTACGG
GATCGGTGAAGCAGATCTGGAAACCCGTATACAGAGTATTTTGGAGGAACAGACAAATCCTACAGTTGCCCCGCTTGCTT
CAGATGGTGAAGTTACATTGCGCATTACGGCAAAAGCACAAAACGAACAACAGGCATTCCGTCTAATCGAGTTAAAGAAA
CGTGAAATTCTCGATATCGTCGGAGAATACTATTATGGCGTAAATGATGAATCATTAGGTTTCAAGCTTGTGCAAATGCT
TCTTGAAAATGAATTAACAGTTTCCGCTGCCGAAAGTTTAACGGCCGGTCTGTTCCAGTCGGAGCTGGCAGAAATCCCGG
GTGTTGGATCTGCATTAATCGGCGGTGTTGTGACGTATACGAAAGAAGCAAAAATTAAGCACCTCGGTGTTTCCGGTGAA
CTGCTTGATGAAAAAGGCATCGTCAGCAGTGAATGTGCAGCAGCAATGGCAACACAAGTCCGTGAAAAGTTCGGTACAGA
TATCGGCGTTGGGTTGACGGGAGCAGCAGGACCGGGTGATCATGACGGACAGCCTGCAGGATCAATCTGGGTTGGCATTA
AGATCGGTGACACAGAACCGCTCACGTACCGACTACAATTAACCGGTTCAAGAAATACGAACCGAATCCGCGCAGTGAAG
TTTACATTCAGCTATTTAATGAGAGAATTAGCGAATCAAGGTTACAAAAAGCTGATTTAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(260-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.471

97.375

0.501
  cinA Streptococcus mutans UA159

43.855

99.045

0.434
  cinA Streptococcus mitis SK321

45.052

91.647

0.413
  cinA Streptococcus mitis NCTC 12261

44.792

91.647

0.411
  cinA Streptococcus pneumoniae TIGR4

44.531

91.647

0.408
  cinA Streptococcus pneumoniae Rx1

44.271

91.647

0.406
  cinA Streptococcus pneumoniae R6

44.271

91.647

0.406
  cinA Streptococcus pneumoniae D39

44.01

91.647

0.403

Multiple sequence alignment