Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MKY13_RS05000 Genome accession   NZ_CP150204
Coordinates   1042027..1043091 (+) Length   354 a.a.
NCBI ID   WP_191698338.1    Uniprot ID   -
Organism   Solibacillus sp. FSL W8-0372     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1037027..1048091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY13_RS04975 (MKY13_04975) - 1037627..1037884 (+) 258 WP_191698343.1 DUF3243 domain-containing protein -
  MKY13_RS04980 (MKY13_04980) - 1038088..1038876 (+) 789 WP_191698342.1 DUF3388 domain-containing protein -
  MKY13_RS04985 (MKY13_04985) - 1038931..1039824 (+) 894 WP_339215567.1 helix-turn-helix domain-containing protein -
  MKY13_RS04990 (MKY13_04990) pgsA 1039871..1040449 (+) 579 WP_339215569.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MKY13_RS04995 (MKY13_04995) cinA 1040600..1041859 (+) 1260 WP_339215572.1 competence/damage-inducible protein A Machinery gene
  MKY13_RS05000 (MKY13_05000) recA 1042027..1043091 (+) 1065 WP_191698338.1 recombinase RecA Machinery gene
  MKY13_RS05005 (MKY13_05005) rny 1043816..1045369 (+) 1554 WP_191698337.1 ribonuclease Y -
  MKY13_RS05010 (MKY13_05010) - 1045526..1045657 (+) 132 WP_191698336.1 transposase -
  MKY13_RS05015 (MKY13_05015) - 1045685..1046011 (-) 327 WP_339215575.1 hypothetical protein -
  MKY13_RS05020 (MKY13_05020) - 1046874..1047785 (+) 912 WP_191698334.1 ATP-grasp fold amidoligase family protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38448.64 Da        Isoelectric Point: 4.8042

>NTDB_id=966273 MKY13_RS05000 WP_191698338.1 1042027..1043091(+) (recA) [Solibacillus sp. FSL W8-0372]
MSDRKAALDMALKQIEKQFGKGSVMKLGENSNRHMETTSSGSIAIDAALGIGGYPRGRIVEVYGPESSGKTTVTLHAIAE
IQANGGTAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGVINKSNTLAIFINQVREKIGVMFGNPETTTGGRALKFYSSIRLEVRRGEAIKQGTEIIGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIVDIGAELDIIQKSGSWYSYNNERIGQGRENVKQFLKENPAIKEDVTEK
IRQHFGIGELGYTIGANDTAEEEIDELELFEEEK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=966273 MKY13_RS05000 WP_191698338.1 1042027..1043091(+) (recA) [Solibacillus sp. FSL W8-0372]
TTGAGCGATCGTAAAGCAGCGTTAGACATGGCGTTAAAACAAATAGAAAAACAATTCGGTAAAGGTTCTGTCATGAAGTT
AGGTGAAAATTCCAACCGACATATGGAGACAACTTCATCAGGCTCTATCGCAATTGATGCAGCATTAGGTATAGGCGGCT
ACCCACGTGGACGTATTGTAGAAGTATACGGACCAGAATCATCTGGTAAAACAACAGTTACATTACATGCCATCGCAGAA
ATACAGGCAAATGGCGGTACAGCAGCATTTATCGATGCTGAGCACGCACTTGACCCGGTATATGCACAAAAATTAGGCGT
TAATATAGATGAGTTACTATTATCACAGCCGGATACAGGTGAACAAGCACTTGAAATCGCGGAAGCATTAGTACGTTCTG
GTGCGATTGATATTATCGTAATCGACTCTGTAGCAGCATTAGTACCAAAAGCAGAGATTGAAGGCGAAATGGGTGACTCG
CACATGGGTCTTCAAGCGCGTTTAATGTCTCAGGCATTACGTAAATTATCAGGTGTTATTAACAAATCAAATACGCTTGC
TATTTTCATCAACCAAGTTCGTGAAAAAATCGGAGTTATGTTCGGTAATCCGGAAACAACAACAGGTGGACGTGCCCTTA
AATTCTACTCTTCTATCCGTTTAGAAGTACGTCGCGGTGAAGCGATTAAGCAAGGTACAGAAATTATCGGTAACAAAACG
AAAATCAAAGTTGTTAAAAATAAAGTAGCTCCACCATTCCGTACAGCAGAAGTAGACATTATGTACGGTGAAGGGATTTC
AAAAGAAGGTGAAATCGTCGACATCGGTGCAGAACTGGATATTATCCAAAAGAGCGGTTCATGGTATTCATATAATAATG
AACGAATTGGCCAAGGCCGTGAAAACGTAAAACAATTCTTAAAAGAAAACCCTGCAATTAAAGAGGATGTAACAGAAAAA
ATCCGTCAACATTTCGGAATCGGCGAGCTTGGCTATACAATCGGTGCCAATGACACAGCAGAAGAAGAAATCGATGAACT
GGAATTATTTGAAGAAGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.957

92.373

0.757
  recA Latilactobacillus sakei subsp. sakei 23K

71.037

92.655

0.658
  recA Streptococcus mutans UA159

65.517

98.305

0.644
  recA Neisseria gonorrhoeae MS11

65.507

97.458

0.638
  recA Neisseria gonorrhoeae MS11

65.507

97.458

0.638
  recA Neisseria gonorrhoeae strain FA1090

65.507

97.458

0.638
  recA Streptococcus pyogenes NZ131

64.387

99.153

0.638
  recA Acinetobacter baylyi ADP1

63.61

98.588

0.627
  recA Streptococcus mitis SK321

62.571

98.87

0.619
  recA Glaesserella parasuis strain SC1401

61.714

98.87

0.61
  recA Streptococcus pneumoniae R6

65.152

93.22

0.607
  recA Streptococcus mitis NCTC 12261

65.152

93.22

0.607
  recA Streptococcus pneumoniae Rx1

65.152

93.22

0.607
  recA Streptococcus pneumoniae D39

65.152

93.22

0.607
  recA Streptococcus pneumoniae TIGR4

65.152

93.22

0.607
  recA Acinetobacter baumannii D1279779

61.919

97.175

0.602
  recA Ralstonia pseudosolanacearum GMI1000

64.939

92.655

0.602
  recA Lactococcus lactis subsp. cremoris KW2

64.545

93.22

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.325

91.243

0.596
  recA Vibrio cholerae strain A1552

65.325

91.243

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.526

92.938

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.577

92.09

0.576
  recA Helicobacter pylori strain NCTC11637

62.195

92.655

0.576
  recA Helicobacter pylori 26695

61.89

92.655

0.573
  recA Pseudomonas stutzeri DSM 10701

62.848

91.243

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.938

90.395

0.551

Multiple sequence alignment