Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MKY13_RS04995 Genome accession   NZ_CP150204
Coordinates   1040600..1041859 (+) Length   419 a.a.
NCBI ID   WP_339215572.1    Uniprot ID   -
Organism   Solibacillus sp. FSL W8-0372     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1035600..1046859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY13_RS04970 (MKY13_04970) - 1036849..1037577 (+) 729 WP_339215564.1 SDR family oxidoreductase -
  MKY13_RS04975 (MKY13_04975) - 1037627..1037884 (+) 258 WP_191698343.1 DUF3243 domain-containing protein -
  MKY13_RS04980 (MKY13_04980) - 1038088..1038876 (+) 789 WP_191698342.1 DUF3388 domain-containing protein -
  MKY13_RS04985 (MKY13_04985) - 1038931..1039824 (+) 894 WP_339215567.1 helix-turn-helix domain-containing protein -
  MKY13_RS04990 (MKY13_04990) pgsA 1039871..1040449 (+) 579 WP_339215569.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MKY13_RS04995 (MKY13_04995) cinA 1040600..1041859 (+) 1260 WP_339215572.1 competence/damage-inducible protein A Machinery gene
  MKY13_RS05000 (MKY13_05000) recA 1042027..1043091 (+) 1065 WP_191698338.1 recombinase RecA Machinery gene
  MKY13_RS05005 (MKY13_05005) rny 1043816..1045369 (+) 1554 WP_191698337.1 ribonuclease Y -
  MKY13_RS05010 (MKY13_05010) - 1045526..1045657 (+) 132 WP_191698336.1 transposase -
  MKY13_RS05015 (MKY13_05015) - 1045685..1046011 (-) 327 WP_339215575.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46024.61 Da        Isoelectric Point: 4.7113

>NTDB_id=966272 MKY13_RS04995 WP_339215572.1 1040600..1041859(+) (cinA) [Solibacillus sp. FSL W8-0372]
MNAEIIAVGSELLLGQIANTNAKFISSQLSELGINVYYHTVVGDNEARLLEAIHIAEQRADLIIFSGGLGPTKDDLTKET
IARHLNRNLVFDETALYAIEEFFSKQKRPMTENNRKQALVLEGCDVLLNQHGMAPGMFLSDNDRIYILLPGPPKELEPMF
QYETKPKLAALLHDGGVILSHVLRFYGIGEAELEDRIENILDEQTNPTVAPLASDGEVTLRITAKAQNEQQAFRLIELKK
REILDIVGEYFYGVNDESLGFNLVQMLLENELTISAAESLTAGLFQSELAEVPGVASALIGGVVTYTKETKIEQLGISAD
LIEEYGIVSSECAAAMATKVREKFHTDIGIGLTGAAGPGSHDGLPAGAIWVGISIGDHEPFTYRLQLTGSRNTNRIRAVK
FTFSYLMRELAKLGYKKLI

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=966272 MKY13_RS04995 WP_339215572.1 1040600..1041859(+) (cinA) [Solibacillus sp. FSL W8-0372]
ATGAATGCAGAAATTATTGCGGTAGGGTCGGAATTGTTATTGGGGCAAATTGCCAATACGAATGCAAAGTTTATTTCAAG
CCAACTATCTGAGCTTGGGATTAATGTTTATTATCATACCGTTGTAGGGGACAATGAGGCGCGGCTTCTCGAGGCAATCC
ATATTGCAGAACAGCGAGCAGACCTGATTATTTTCTCCGGCGGGTTAGGACCGACAAAGGATGATTTAACGAAGGAAACA
ATTGCAAGGCATTTAAATCGAAATTTAGTATTTGACGAGACTGCACTCTATGCGATTGAAGAGTTCTTTTCAAAACAAAA
ACGTCCTATGACAGAAAACAACCGCAAACAGGCGCTTGTATTGGAAGGCTGCGATGTACTGCTGAATCAGCATGGCATGG
CACCAGGCATGTTCTTATCCGACAATGACCGCATTTATATTTTGCTTCCAGGACCGCCAAAAGAGCTGGAGCCAATGTTC
CAATACGAAACGAAACCGAAGTTAGCCGCACTTTTACATGATGGTGGCGTTATTTTATCGCATGTACTGCGTTTTTATGG
CATTGGGGAAGCAGAACTGGAAGATCGTATCGAGAATATATTGGATGAACAAACGAATCCAACTGTTGCACCGCTTGCTT
CAGATGGGGAAGTGACACTACGAATTACAGCGAAAGCGCAAAATGAACAGCAGGCATTCCGCTTAATTGAATTAAAGAAA
CGTGAAATTTTAGATATCGTCGGAGAGTATTTTTACGGGGTTAATGATGAATCACTTGGCTTTAATCTTGTCCAAATGTT
ATTGGAAAATGAATTAACGATTTCTGCCGCAGAAAGTTTAACTGCCGGTCTGTTCCAGTCAGAGCTGGCAGAGGTCCCTG
GTGTCGCCTCTGCATTAATTGGCGGCGTTGTGACGTATACGAAGGAAACAAAAATAGAACAGCTCGGCATTTCCGCGGAT
CTTATCGAAGAATATGGCATTGTAAGCAGTGAATGTGCAGCTGCAATGGCTACGAAAGTTCGAGAAAAATTCCATACAGA
TATCGGTATAGGGTTAACAGGCGCTGCAGGACCAGGCAGTCATGACGGTCTACCTGCAGGAGCCATTTGGGTAGGAATTA
GTATCGGCGACCATGAGCCTTTCACATATCGTTTGCAGCTAACAGGGTCCCGAAACACGAATCGAATCAGGGCCGTTAAA
TTTACATTTAGCTATTTAATGAGAGAACTGGCTAAACTAGGTTATAAAAAGCTAATCTAG

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(262-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.323

97.613

0.511
  cinA Streptococcus mitis SK321

43.839

100

0.442
  cinA Streptococcus mutans UA159

43.16

100

0.437
  cinA Streptococcus pneumoniae TIGR4

43.571

100

0.437
  cinA Streptococcus pneumoniae Rx1

43.333

100

0.434
  cinA Streptococcus pneumoniae R6

43.333

100

0.434
  cinA Streptococcus pneumoniae D39

43.095

100

0.432
  cinA Streptococcus mitis NCTC 12261

45.195

91.885

0.415
  cinA Streptococcus suis isolate S10

41.962

87.589

0.368

Multiple sequence alignment