Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   NYE32_RS00370 Genome accession   NZ_CP150201
Coordinates   63340..64479 (+) Length   379 a.a.
NCBI ID   WP_002889600.1    Uniprot ID   J7SI42
Organism   Streptococcus sp. FSL R7-0248     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 58340..69479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE32_RS00350 (NYE32_00350) - 60405..60626 (+) 222 WP_037597288.1 hypothetical protein -
  NYE32_RS00355 (NYE32_00355) ruvA 60784..61374 (+) 591 WP_037599413.1 Holliday junction branch migration protein RuvA -
  NYE32_RS00360 (NYE32_00360) - 61383..61937 (+) 555 WP_037599412.1 DNA-3-methyladenine glycosylase I -
  NYE32_RS00365 (NYE32_00365) cinA 62034..63299 (+) 1266 WP_037599410.1 competence/damage-inducible protein A Machinery gene
  NYE32_RS00370 (NYE32_00370) recA 63340..64479 (+) 1140 WP_002889600.1 recombinase RecA Machinery gene
  NYE32_RS00375 (NYE32_00375) spx 64648..65046 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence


Protein


Download         Length: 379 a.a.        Molecular weight: 40925.43 Da        Isoelectric Point: 4.7970

>NTDB_id=966139 NYE32_RS00370 WP_002889600.1 63340..64479(+) (recA) [Streptococcus sp. FSL R7-0248]
MAKKTKKTEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYNGEKIGQGSE
NAKKYLADHPDIFEEIDHKVRVHYGLIEPDEEDSVEEAQVEETSDELVLDLDSTIEIEE

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=966139 NYE32_RS00370 WP_002889600.1 63340..64479(+) (recA) [Streptococcus sp. FSL R7-0248]
GTGGCTAAGAAAACAAAGAAAACAGAAGAAATCACAAAGAAATTTGGAGATGAGCGTCGTAAAGCACTTGATGATGCTTT
GAAGAATATTGAAAAAGATTTTGGTAAGGGAGCAGTTATGCGTCTTGGTGAGCGTGCAGAGCAGAAGGTTCAGGTTATGA
GCTCAGGCTCGCTAGCTTTGGATATTGCTCTTGGTGCAGGTGGTTATCCTAAAGGTCGTATTATCGAAATTTACGGACCA
GAATCATCAGGTAAAACGACTGTAGCCCTCCATGCTGTTGCTCAGACACAAAAAGAAGGCGGAATCGCTGCCTTTATCGA
TGCAGAGCATGCCCTTGACCCTGCTTATGCGGCAGCCCTAGGTGTTAATATCGATGAGCTTCTTTTGTCACAACCTGATT
CAGGTGAACAAGGTCTCGAAATTGCTGGTAAGCTGATTGACTCTGGTGCAGTTGATTTGGTTGTTGTTGACTCAGTTGCA
GCCTTGGTACCTCGTGCAGAAATTGATGGAGATATTGGTGACAGTCATGTCGGACTTCAAGCGCGTATGATGAGTCAAGC
CATGCGTAAGCTTTCTGCTTCTATCAATAAAACAAAAACAATTGCTATCTTCATTAACCAATTACGTGAAAAAGTTGGTA
TTATGTTTGGTAATCCAGAAACAACCCCTGGTGGACGTGCTCTAAAATTCTATGCATCAGTACGTCTTGATGTACGTGGA
AATACGCAAATCAAAGGGACTGGTGATAAAAAAGACCAAAATGTTGGTAAGGAAACTAAAATCAAGGTTGTCAAAAACAA
GGTTGCCCCACCATTTAAAGAAGCCTTTGTCGAAATTATGTATGGTGAAGGGATTTCACAAACAGGTGAGCTTGTAAAAA
TCGCTAGTGATTTAGGAATTATTCAAAAAGCCGGAGCGTGGTTCTCATATAATGGAGAGAAGATTGGTCAAGGATCTGAA
AATGCTAAAAAATATTTGGCAGATCATCCAGATATTTTTGAAGAAATTGATCATAAAGTACGTGTACACTATGGTTTGAT
TGAACCAGATGAAGAGGATAGTGTTGAAGAAGCACAAGTTGAAGAAACATCTGATGAACTTGTTTTGGACCTTGATTCAA
CCATTGAAATTGAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB J7SI42

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

89.556

100

0.905

  recA Streptococcus pyogenes NZ131

90.237

100

0.902

  recA Streptococcus mitis NCTC 12261

86.352

100

0.868

  recA Streptococcus mitis SK321

86.352

100

0.868

  recA Streptococcus pneumoniae Rx1

85.195

100

0.865

  recA Streptococcus pneumoniae D39

85.195

100

0.865

  recA Streptococcus pneumoniae R6

85.195

100

0.865

  recA Streptococcus pneumoniae TIGR4

85.195

100

0.865

  recA Lactococcus lactis subsp. cremoris KW2

78

92.348

0.72

  recA Latilactobacillus sakei subsp. sakei 23K

67.33

92.876

0.625

  recA Bacillus subtilis subsp. subtilis str. 168

68.389

86.807

0.594

  recA Glaesserella parasuis strain SC1401

56.486

97.625

0.551

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.472

89.446

0.541

  recA Acinetobacter baumannii D1279779

62.462

85.752

0.536

  recA Acinetobacter baylyi ADP1

62.154

85.752

0.533

  recA Neisseria gonorrhoeae MS11

60.725

87.335

0.53

  recA Neisseria gonorrhoeae MS11

60.725

87.335

0.53

  recA Neisseria gonorrhoeae strain FA1090

60.725

87.335

0.53

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

85.224

0.53

  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.923

85.752

0.522

  recA Vibrio cholerae strain A1552

60.923

85.752

0.522

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.522

91.029

0.515

  recA Helicobacter pylori 26695

55.331

91.557

0.507

  recA Helicobacter pylori strain NCTC11637

55.331

91.557

0.507

  recA Pseudomonas stutzeri DSM 10701

58.154

85.752

0.499

  recA Ralstonia pseudosolanacearum GMI1000

59.306

83.641

0.496


Multiple sequence alignment