Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NYE32_RS00365 Genome accession   NZ_CP150201
Coordinates   62034..63299 (+) Length   421 a.a.
NCBI ID   WP_037599410.1    Uniprot ID   -
Organism   Streptococcus sp. FSL R7-0248     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 57034..68299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE32_RS00335 (NYE32_00335) - 57364..57801 (-) 438 WP_013989911.1 LytTR family DNA-binding domain-containing protein -
  NYE32_RS00340 (NYE32_00340) - 57980..58285 (+) 306 WP_155198552.1 hypothetical protein -
  NYE32_RS00345 (NYE32_00345) mutL 58337..60274 (+) 1938 WP_155198551.1 DNA mismatch repair endonuclease MutL -
  NYE32_RS00350 (NYE32_00350) - 60405..60626 (+) 222 WP_037597288.1 hypothetical protein -
  NYE32_RS00355 (NYE32_00355) ruvA 60784..61374 (+) 591 WP_037599413.1 Holliday junction branch migration protein RuvA -
  NYE32_RS00360 (NYE32_00360) - 61383..61937 (+) 555 WP_037599412.1 DNA-3-methyladenine glycosylase I -
  NYE32_RS00365 (NYE32_00365) cinA 62034..63299 (+) 1266 WP_037599410.1 competence/damage-inducible protein A Machinery gene
  NYE32_RS00370 (NYE32_00370) recA 63340..64479 (+) 1140 WP_002889600.1 recombinase RecA Machinery gene
  NYE32_RS00375 (NYE32_00375) spx 64648..65046 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45617.82 Da        Isoelectric Point: 5.9555

>NTDB_id=966138 NYE32_RS00365 WP_037599410.1 62034..63299(+) (cinA) [Streptococcus sp. FSL R7-0248]
MKAELIAVGTEILTGQITNTNAQFLSEKLAELGIDVYFHTAVGDNENRLLSVLDQASKRSDLVILCGGLGPTEDDLTKQT
LAKFLGKKLVFDEEASKKLDSFFATRPKHTRTPNNERQAQIVEGAIPLQNPTGLAVGGVITTQGVTYVVLPGPPSELKPM
VNQELVPALTENHASLYSRVLRFFGVGESQLVTILKDFIVNQTDPTIAPYAKVGEVTLRLSTKASSREEADQKLDVLEKQ
IRSTKTLDGKSLSDFIYGYGESNSLAFETFRLFKNHGKTITAAESLTAGLFQASIADFSGASQVLKGGFVTYSIEEKSKM
LDIPLSQLEEHGVVSHFTAEKMAEGARAKTDSDYGIALTGVAGPDSLEGHPAGTVFIGIADRNQVRSIKVVIGGRSRSDV
RYISTLYAFNLVRQALLQETT

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=966138 NYE32_RS00365 WP_037599410.1 62034..63299(+) (cinA) [Streptococcus sp. FSL R7-0248]
ATGAAAGCTGAATTGATTGCAGTAGGAACCGAAATCCTAACTGGGCAAATCACCAATACCAATGCCCAATTTTTATCTGA
GAAACTAGCTGAACTAGGAATTGACGTGTATTTTCACACAGCAGTAGGAGACAATGAAAACCGCCTACTCTCAGTTCTAG
ACCAAGCTAGTAAACGTAGTGACTTAGTCATACTTTGTGGAGGACTTGGCCCTACGGAGGACGATTTAACCAAGCAAACC
CTAGCTAAGTTCTTAGGAAAAAAACTTGTTTTTGATGAGGAGGCAAGTAAAAAGCTGGACAGTTTCTTTGCTACTCGCCC
TAAACACACACGAACGCCTAATAATGAACGTCAAGCGCAAATTGTTGAGGGGGCTATCCCCTTGCAAAATCCTACAGGTC
TTGCAGTTGGAGGCGTCATTACTACTCAAGGGGTGACCTATGTAGTCCTACCTGGGCCACCAAGTGAACTTAAACCTATG
GTGAATCAGGAACTTGTTCCAGCACTTACTGAGAATCACGCAAGTCTTTATTCGAGAGTCCTAAGATTCTTTGGCGTTGG
AGAAAGTCAATTGGTGACTATTCTGAAGGATTTTATTGTTAACCAAACAGATCCAACCATAGCTCCATACGCTAAAGTGG
GGGAAGTAACACTTCGCTTGTCAACAAAGGCTTCTTCACGAGAAGAAGCAGATCAAAAACTAGATGTTTTAGAAAAACAA
ATTCGTTCTACTAAAACTCTAGATGGCAAATCCTTATCTGATTTTATTTACGGATATGGAGAGTCTAATAGTTTAGCATT
TGAAACTTTCCGTTTGTTTAAGAACCATGGCAAGACTATCACTGCAGCTGAAAGCCTAACAGCAGGTTTATTTCAGGCTA
GTATTGCTGATTTTTCAGGAGCCTCACAAGTATTAAAAGGCGGCTTTGTTACTTACAGCATTGAAGAAAAATCTAAAATG
TTGGATATTCCCTTGTCGCAACTAGAAGAACATGGTGTTGTCAGTCATTTTACTGCAGAAAAAATGGCTGAAGGTGCCCG
AGCTAAAACAGATAGCGATTACGGAATTGCACTTACCGGTGTAGCTGGACCAGATTCATTAGAAGGACACCCAGCAGGTA
CAGTATTTATTGGTATTGCTGATAGGAATCAAGTAAGGTCAATCAAGGTTGTTATAGGTGGAAGAAGTCGTTCTGACGTT
AGATATATTAGTACCCTCTATGCCTTTAACCTAGTTCGCCAAGCTTTATTACAAGAGACAACTTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-243)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Competence-damaged protein (CinA)

(264-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

74.224

99.525

0.739
  cinA Streptococcus mitis NCTC 12261

73.508

99.525

0.732
  cinA Streptococcus pneumoniae TIGR4

73.27

99.525

0.729
  cinA Streptococcus pneumoniae Rx1

73.031

99.525

0.727
  cinA Streptococcus pneumoniae R6

73.031

99.525

0.727
  cinA Streptococcus pneumoniae D39

72.792

99.525

0.724
  cinA Streptococcus mutans UA159

70.504

99.05

0.698
  cinA Streptococcus suis isolate S10

54.808

98.812

0.542
  cinA Bacillus subtilis subsp. subtilis str. 168

44.893

100

0.449

Multiple sequence alignment