Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NSQ18_RS02205 Genome accession   NZ_CP150191
Coordinates   438047..439108 (-) Length   353 a.a.
NCBI ID   WP_339288819.1    Uniprot ID   -
Organism   Ureibacillus sp. FSL K6-0786     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 433047..444108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ18_RS02190 (NSQ18_02190) - 434538..434804 (-) 267 WP_016836831.1 stage V sporulation protein S -
  NSQ18_RS02195 (NSQ18_02195) - 434963..435760 (-) 798 WP_016836830.1 TIGR00282 family metallophosphoesterase -
  NSQ18_RS02200 (NSQ18_02200) rny 435967..437520 (-) 1554 WP_339288818.1 ribonuclease Y -
  NSQ18_RS02205 (NSQ18_02205) recA 438047..439108 (-) 1062 WP_339288819.1 recombinase RecA Machinery gene
  NSQ18_RS02210 (NSQ18_02210) cinA 439246..440499 (-) 1254 WP_339288820.1 competence/damage-inducible protein A Machinery gene
  NSQ18_RS02215 (NSQ18_02215) pgsA 440513..441091 (-) 579 WP_016836826.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NSQ18_RS02220 (NSQ18_02220) - 441143..442039 (-) 897 WP_184656202.1 RodZ family helix-turn-helix domain-containing protein -
  NSQ18_RS02225 (NSQ18_02225) - 442058..442837 (-) 780 WP_016836824.1 DUF3388 domain-containing protein -
  NSQ18_RS02230 (NSQ18_02230) - 443123..443380 (-) 258 WP_016836823.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38372.72 Da        Isoelectric Point: 4.6734

>NTDB_id=965650 NSQ18_RS02205 WP_339288819.1 438047..439108(-) (recA) [Ureibacillus sp. FSL K6-0786]
MSDRKAALDMALKQIEKQFGKGSIMKLGEKTDLQISTVPSGSLALDAALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQAQGGQAAFIDAEHALDPIYAQKLGVNIDELILSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGVINKSNTICIFINQVRDKIGVMFGNPETTPGGRALKFYSSIRLEVRRAETIKQGSEMVGSKT
KIKVVKNKVAPPFRTAEVDIMFGEGISKEGEIVDIGAELDIIQKSGSWYSYNDERIGQGRENVKQFFKANPEIRDEIAQK
IRESFGMTSNSYMIAAHDDDEELAEELPLFDEE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=965650 NSQ18_RS02205 WP_339288819.1 438047..439108(-) (recA) [Ureibacillus sp. FSL K6-0786]
TTGAGTGATCGTAAAGCTGCCTTAGATATGGCGTTAAAACAAATTGAAAAGCAATTCGGTAAAGGCTCCATTATGAAACT
CGGTGAAAAAACGGATTTGCAAATTTCGACTGTGCCAAGTGGTTCACTAGCTCTTGATGCAGCCCTTGGTGTAGGGGGAT
ATCCGAGAGGACGTATTATTGAAATTTATGGTCCAGAGTCATCCGGTAAAACTACAGTGGCATTACATGCAATTGCGGAA
GTTCAGGCACAAGGTGGACAAGCGGCATTTATTGATGCAGAACACGCATTAGACCCAATTTACGCTCAAAAATTAGGCGT
TAATATCGATGAATTAATTCTTTCCCAACCTGATACTGGAGAGCAAGCGTTGGAAATTGCTGAGGCATTAGTGCGAAGCG
GTGCAATTGATATTATTGTCATCGATTCTGTAGCGGCATTAGTGCCAAAAGCGGAGATTGAAGGAGAAATGGGCGACTCA
CACATGGGGTTACAAGCTCGCCTAATGTCTCAAGCTTTACGAAAATTATCTGGGGTCATCAATAAATCAAATACAATCTG
CATTTTCATTAACCAAGTTCGTGATAAAATCGGCGTAATGTTTGGCAATCCAGAAACGACACCTGGTGGCCGTGCTTTAA
AATTCTATTCTTCCATCCGTTTAGAAGTTCGCCGTGCGGAAACAATTAAACAAGGTAGCGAAATGGTTGGAAGTAAAACA
AAAATTAAAGTAGTGAAAAATAAAGTAGCTCCACCATTCCGCACTGCAGAAGTGGATATTATGTTCGGTGAAGGAATTTC
GAAAGAAGGCGAAATTGTCGATATTGGTGCAGAGCTAGACATTATTCAGAAGAGCGGTTCTTGGTATTCATACAACGATG
AGAGAATTGGACAAGGTCGAGAAAACGTGAAACAATTCTTTAAAGCAAATCCAGAAATTCGCGATGAAATTGCACAAAAA
ATTCGTGAATCCTTTGGCATGACATCGAATTCCTACATGATTGCAGCTCATGACGATGACGAAGAGCTCGCAGAAGAATT
ACCGTTATTTGATGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.939

93.484

0.785
  recA Latilactobacillus sakei subsp. sakei 23K

73.62

92.351

0.68
  recA Streptococcus mitis NCTC 12261

65.517

98.584

0.646
  recA Streptococcus pyogenes NZ131

64.023

100

0.64
  recA Streptococcus pneumoniae Rx1

67.273

93.484

0.629
  recA Streptococcus pneumoniae D39

67.273

93.484

0.629
  recA Streptococcus pneumoniae R6

67.273

93.484

0.629
  recA Streptococcus pneumoniae TIGR4

67.273

93.484

0.629
  recA Streptococcus mitis SK321

66.97

93.484

0.626
  recA Streptococcus mutans UA159

67.173

93.201

0.626
  recA Lactococcus lactis subsp. cremoris KW2

65.569

94.618

0.62
  recA Neisseria gonorrhoeae MS11

67.284

91.785

0.618
  recA Neisseria gonorrhoeae MS11

67.284

91.785

0.618
  recA Neisseria gonorrhoeae strain FA1090

67.284

91.785

0.618
  recA Glaesserella parasuis strain SC1401

61.648

99.717

0.615
  recA Acinetobacter baylyi ADP1

62.974

97.167

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.235

96.317

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.046

93.201

0.606
  recA Vibrio cholerae strain A1552

61.808

97.167

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.808

97.167

0.601
  recA Ralstonia pseudosolanacearum GMI1000

64.634

92.918

0.601
  recA Acinetobacter baumannii D1279779

61.947

96.034

0.595
  recA Helicobacter pylori 26695

62.769

92.068

0.578
  recA Helicobacter pylori strain NCTC11637

62.769

92.068

0.578
  recA Pseudomonas stutzeri DSM 10701

61.774

92.635

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.25

90.652

0.555

Multiple sequence alignment