Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NSQ18_RS02210 Genome accession   NZ_CP150191
Coordinates   439246..440499 (-) Length   417 a.a.
NCBI ID   WP_339288820.1    Uniprot ID   -
Organism   Ureibacillus sp. FSL K6-0786     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 434246..445499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ18_RS02190 (NSQ18_02190) - 434538..434804 (-) 267 WP_016836831.1 stage V sporulation protein S -
  NSQ18_RS02195 (NSQ18_02195) - 434963..435760 (-) 798 WP_016836830.1 TIGR00282 family metallophosphoesterase -
  NSQ18_RS02200 (NSQ18_02200) rny 435967..437520 (-) 1554 WP_339288818.1 ribonuclease Y -
  NSQ18_RS02205 (NSQ18_02205) recA 438047..439108 (-) 1062 WP_339288819.1 recombinase RecA Machinery gene
  NSQ18_RS02210 (NSQ18_02210) cinA 439246..440499 (-) 1254 WP_339288820.1 competence/damage-inducible protein A Machinery gene
  NSQ18_RS02215 (NSQ18_02215) pgsA 440513..441091 (-) 579 WP_016836826.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NSQ18_RS02220 (NSQ18_02220) - 441143..442039 (-) 897 WP_184656202.1 RodZ family helix-turn-helix domain-containing protein -
  NSQ18_RS02225 (NSQ18_02225) - 442058..442837 (-) 780 WP_016836824.1 DUF3388 domain-containing protein -
  NSQ18_RS02230 (NSQ18_02230) - 443123..443380 (-) 258 WP_016836823.1 DUF3243 domain-containing protein -
  NSQ18_RS02235 (NSQ18_02235) - 443425..444153 (-) 729 WP_339288825.1 SDR family oxidoreductase -
  NSQ18_RS02240 (NSQ18_02240) - 444150..445442 (-) 1293 WP_016836821.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45166.95 Da        Isoelectric Point: 5.9148

>NTDB_id=965651 NSQ18_RS02210 WP_339288820.1 439246..440499(-) (cinA) [Ureibacillus sp. FSL K6-0786]
MNAEIIAVGSELLLGQIANTNAKFISSQLSELGINVYYHSVIGDNGGRLKKAIEIAESRADLIIFSGGLGPTKDDLTKET
IAEHLNVPLVFDEKALETIEKFFTNQGRPLTENNRKQALVLQGSEVLVNHHGLAPGMLLQKGGRTYILLPGPPKELEPMF
QFEVKPKLASLISKGGIILSHVLRFYGIGEAELETKIQHILDAQSNPTIAPLASDGEVTLRITAKADSKAEAWELINEKK
REILSIVGKYNYGVDDDTLASKAVEMLLHNRLTISAAESLTAGLFQSELAEIPGVSGTLVGGMVTYTEEAKIQQLGIPKE
LLNQYGIVSSECAASMARNVRKKFGTDIGIGLTGAAGPEPHDGEPAGTIWIGIAIGEDVVTRKLQLSGLRNTNRLCTVKY
TLSYLIRLLEEKGYQKV

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=965651 NSQ18_RS02210 WP_339288820.1 439246..440499(-) (cinA) [Ureibacillus sp. FSL K6-0786]
ATGAATGCCGAAATTATTGCAGTTGGCTCTGAGTTGCTATTAGGTCAAATTGCCAATACGAATGCAAAATTTATTTCCAG
CCAATTATCAGAACTTGGTATTAACGTATATTATCATTCGGTGATTGGCGACAACGGAGGTAGGCTCAAAAAAGCTATTG
AAATTGCTGAATCCCGTGCAGATTTAATCATTTTTTCCGGCGGATTAGGACCAACGAAGGACGATTTAACAAAAGAAACG
ATTGCAGAGCATTTAAATGTGCCTCTCGTTTTCGATGAAAAAGCACTAGAAACAATTGAAAAATTTTTCACTAACCAAGG
TAGACCGCTTACAGAAAATAATCGAAAACAAGCTCTAGTTTTACAGGGTAGTGAGGTATTAGTTAATCATCACGGTTTAG
CTCCAGGCATGCTGCTTCAAAAGGGAGGACGGACATACATATTATTGCCAGGTCCGCCAAAAGAATTAGAGCCGATGTTT
CAATTTGAAGTCAAACCAAAGTTAGCTTCTCTTATCAGCAAAGGAGGAATCATTCTATCTCACGTTCTTCGCTTTTATGG
CATAGGAGAAGCAGAATTGGAAACGAAGATTCAACATATTTTAGATGCCCAATCAAATCCAACGATTGCCCCACTAGCTT
CTGATGGTGAAGTGACGTTGCGCATTACAGCGAAAGCGGATTCGAAAGCAGAAGCTTGGGAATTAATAAATGAAAAGAAA
AGGGAAATTTTATCGATTGTTGGCAAATATAACTATGGTGTTGACGATGATACGCTCGCATCAAAAGCTGTTGAAATGTT
GCTTCATAATAGGTTAACGATTTCAGCTGCTGAAAGTTTAACAGCGGGATTATTTCAATCAGAACTAGCGGAAATCCCTG
GCGTTAGCGGCACGCTCGTTGGTGGAATGGTGACTTATACAGAAGAGGCAAAAATCCAACAGCTGGGAATTCCAAAAGAA
TTGCTCAATCAATATGGTATCGTGAGTAGCGAGTGTGCTGCGAGTATGGCAAGAAATGTTCGTAAAAAGTTTGGTACGGA
CATTGGCATTGGTTTGACAGGAGCAGCTGGCCCAGAACCACATGACGGAGAGCCGGCAGGAACAATTTGGATTGGCATCG
CGATTGGCGAGGATGTAGTGACGAGGAAACTTCAATTGTCTGGACTTCGAAATACCAACCGTTTATGTACCGTCAAATAT
ACGTTGAGTTATTTAATCCGATTGCTTGAGGAAAAAGGATATCAAAAGGTCTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.951

98.321

0.511
  cinA Streptococcus pneumoniae TIGR4

45.865

95.683

0.439
  cinA Streptococcus mitis SK321

46.53

93.285

0.434
  cinA Streptococcus pneumoniae R6

45.363

95.683

0.434
  cinA Streptococcus pneumoniae Rx1

45.363

95.683

0.434
  cinA Streptococcus pneumoniae D39

45.113

95.683

0.432
  cinA Streptococcus mitis NCTC 12261

46.015

93.285

0.429
  cinA Streptococcus mutans UA159

43.829

95.204

0.417
  cinA Streptococcus suis isolate S10

39.141

94.964

0.372

Multiple sequence alignment