Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NST31_RS01180 Genome accession   NZ_CP150169
Coordinates   250594..251631 (-) Length   345 a.a.
NCBI ID   WP_077111668.1    Uniprot ID   -
Organism   Siminovitchia sp. FSL W7-1587     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 245594..256631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST31_RS01160 (NST31_01160) - 246306..246557 (-) 252 WP_077111664.1 hypothetical protein -
  NST31_RS01165 (NST31_01165) spoVS 246781..247041 (-) 261 WP_077111665.1 stage V sporulation protein SpoVS -
  NST31_RS01170 (NST31_01170) - 247184..247981 (-) 798 WP_077111666.1 TIGR00282 family metallophosphoesterase -
  NST31_RS01175 (NST31_01175) rny 248132..249694 (-) 1563 WP_077111667.1 ribonuclease Y -
  NST31_RS01180 (NST31_01180) recA 250594..251631 (-) 1038 WP_077111668.1 recombinase RecA Machinery gene
  NST31_RS01185 (NST31_01185) cinA 252650..253903 (-) 1254 WP_339163442.1 competence/damage-inducible protein A Machinery gene
  NST31_RS01190 (NST31_01190) pgsA 253921..254499 (-) 579 WP_077111670.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NST31_RS01195 (NST31_01195) - 254626..255579 (-) 954 WP_339165450.1 RodZ family helix-turn-helix domain-containing protein -
  NST31_RS01200 (NST31_01200) - 255585..256385 (-) 801 WP_077111672.1 DUF3388 domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37736.98 Da        Isoelectric Point: 4.9299

>NTDB_id=964650 NST31_RS01180 WP_077111668.1 250594..251631(-) (recA) [Siminovitchia sp. FSL W7-1587]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDRKISTIPSGSLALDIALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
AQARGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIEMIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDVVGTKT
KIKIVKNKVAPPFRVAEVDIMYGEGISREGEIIDMGSELDIIQKSGAWYSYNDERLGQGRENAKQFLRENEDLRDEIMVK
IRNHHGLDEVKADNEEEQEELTLLD

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=964650 NST31_RS01180 WP_077111668.1 250594..251631(-) (recA) [Siminovitchia sp. FSL W7-1587]
GTGAGTGATAGACAAGCTGCACTTGATATGGCTTTAAAGCAAATAGAAAAGCAATTTGGAAAAGGTTCTATCATGAAGCT
GGGGGAGCAGACTGATCGTAAAATCTCGACGATTCCCAGCGGTTCGTTGGCTTTAGATATTGCACTCGGTGTTGGCGGAT
ACCCGAGAGGAAGGGTCATTGAAATTTACGGGCCTGAAAGTTCGGGTAAAACGACTGTTGCGCTTCACGCGATTGCGGAA
GCCCAAGCTCGCGGGGGGCAGGCGGCTTTTATTGATGCCGAGCATGCGCTTGATCCGGTTTATGCCCAAAAGCTGGGCGT
TAACATAGATGAGCTACTTTTATCCCAGCCGGATACAGGTGAGCAGGCGCTTGAGATAGCGGAAGCTCTTGTACGAAGCG
GAGCCATTGAAATGATCGTCATTGACTCGGTTGCCGCTCTCGTGCCAAAAGCGGAAATTGAAGGAGAAATGGGGGATTCC
CACGTTGGTTTGCAGGCGCGGCTCATGTCCCAGGCCCTCAGAAAGCTTTCCGGAGCAATCAATAAGTCTAAGACGATCGC
CATATTTATTAACCAAATTAGGGAGAAAGTTGGCGTCATGTTCGGTAATCCGGAAACGACACCTGGTGGACGGGCTTTGA
AGTTTTATTCTTCGGTCCGGCTTGAAGTCCGTCGTGCCGAGCAACTTAAGCAAGGACAGGATGTAGTTGGAACGAAGACG
AAGATTAAAATTGTCAAAAACAAAGTGGCGCCTCCTTTCCGTGTAGCCGAAGTAGATATTATGTATGGAGAAGGCATTTC
CCGTGAAGGAGAAATTATCGACATGGGATCCGAGCTGGATATTATTCAAAAAAGCGGGGCGTGGTATTCATATAACGATG
AGCGGCTTGGGCAAGGACGTGAAAACGCCAAGCAGTTTCTGCGCGAGAATGAAGATTTGCGGGATGAAATTATGGTGAAA
ATCCGCAACCATCATGGCTTGGATGAAGTAAAAGCAGATAATGAAGAAGAACAGGAAGAATTAACACTGTTAGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.5

95.072

0.832
  recA Latilactobacillus sakei subsp. sakei 23K

71.802

99.71

0.716
  recA Streptococcus pneumoniae R6

67.826

100

0.678
  recA Streptococcus pneumoniae Rx1

67.826

100

0.678
  recA Streptococcus pneumoniae D39

67.826

100

0.678
  recA Streptococcus pneumoniae TIGR4

67.826

100

0.678
  recA Streptococcus mitis NCTC 12261

66.667

100

0.672
  recA Streptococcus mutans UA159

68.035

98.841

0.672
  recA Streptococcus mitis SK321

66.379

100

0.67
  recA Streptococcus pyogenes NZ131

70.122

95.072

0.667
  recA Lactococcus lactis subsp. cremoris KW2

67.879

95.652

0.649
  recA Ralstonia pseudosolanacearum GMI1000

66.258

94.493

0.626
  recA Neisseria gonorrhoeae strain FA1090

65.749

94.783

0.623
  recA Neisseria gonorrhoeae MS11

65.749

94.783

0.623
  recA Neisseria gonorrhoeae MS11

65.749

94.783

0.623
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.652

98.261

0.606
  recA Helicobacter pylori 26695

63.415

95.072

0.603
  recA Helicobacter pylori strain NCTC11637

63.415

95.072

0.603
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.375

92.754

0.597
  recA Vibrio cholerae strain A1552

64.375

92.754

0.597
  recA Acinetobacter baylyi ADP1

60

98.551

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.27

94.493

0.588
  recA Pseudomonas stutzeri DSM 10701

63.125

92.754

0.586
  recA Glaesserella parasuis strain SC1401

62.813

92.754

0.583
  recA Acinetobacter baumannii D1279779

62.5

92.754

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.615

94.203

0.571

Multiple sequence alignment