Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NST31_RS01185 Genome accession   NZ_CP150169
Coordinates   252650..253903 (-) Length   417 a.a.
NCBI ID   WP_339163442.1    Uniprot ID   -
Organism   Siminovitchia sp. FSL W7-1587     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 247650..258903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST31_RS01175 (NST31_01175) rny 248132..249694 (-) 1563 WP_077111667.1 ribonuclease Y -
  NST31_RS01180 (NST31_01180) recA 250594..251631 (-) 1038 WP_077111668.1 recombinase RecA Machinery gene
  NST31_RS01185 (NST31_01185) cinA 252650..253903 (-) 1254 WP_339163442.1 competence/damage-inducible protein A Machinery gene
  NST31_RS01190 (NST31_01190) pgsA 253921..254499 (-) 579 WP_077111670.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NST31_RS01195 (NST31_01195) - 254626..255579 (-) 954 WP_339165450.1 RodZ family helix-turn-helix domain-containing protein -
  NST31_RS01200 (NST31_01200) - 255585..256385 (-) 801 WP_077111672.1 DUF3388 domain-containing protein -
  NST31_RS01205 (NST31_01205) - 256519..256776 (-) 258 WP_077111673.1 DUF3243 domain-containing protein -
  NST31_RS01210 (NST31_01210) - 256867..257592 (-) 726 WP_205179991.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 46157.99 Da        Isoelectric Point: 6.4243

>NTDB_id=964651 NST31_RS01185 WP_339163442.1 252650..253903(-) (cinA) [Siminovitchia sp. FSL W7-1587]
MKAEIIAVGTELLLGQIANTNAQYLSQQLAEIGVNVYFHTVVGDNPDRLVQAIRQAETRADLLIFTGGLGPTQDDLTKEI
VAKHLGKQLTTDEYAWKKIQEYFKRTGRKMTPNNKKQADVIERGKVLPNEHGMAPGIFLQNDSKYYMLLPGPPHEMKPMF
RIYGREAILDQLEQQERIESRVLRFFNIGESQIAHELSDLIESQSNPTVAPLAGDGEVTIRITARHEQEVMAVSMLDDIE
KRILERVGEYFYGYDDTSLMAELLKLLEERQLTIAAAESLTGGLFQSEMTSVVGVSTMLLGGIVCYSNKAKIKLCNVKPE
TIEKHGAVSEQCAAELASNVREALGADIGISFTGVAGPDSLEGHPAGTVWIGIAFKDQPAKALLAKMAGTRNGNRKRSVK
MGCYHLLKELQKSRRID

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=964651 NST31_RS01185 WP_339163442.1 252650..253903(-) (cinA) [Siminovitchia sp. FSL W7-1587]
ATGAAAGCGGAAATCATTGCCGTTGGAACGGAGCTATTACTTGGACAAATTGCCAATACAAACGCCCAATATTTGTCGCA
ACAATTGGCGGAAATTGGTGTGAATGTATATTTTCATACAGTCGTTGGCGATAACCCCGACCGGCTTGTTCAGGCAATCA
GACAGGCCGAAACAAGAGCCGATCTTCTGATTTTTACGGGTGGGCTAGGTCCGACTCAAGACGATTTGACGAAAGAAATT
GTCGCCAAGCACCTTGGCAAACAACTGACAACCGATGAATACGCTTGGAAAAAGATCCAGGAATACTTTAAGCGGACTGG
AAGAAAGATGACTCCGAATAATAAAAAACAAGCAGATGTTATTGAGAGGGGAAAAGTTCTTCCGAATGAACACGGAATGG
CCCCCGGGATATTCCTGCAAAATGACTCGAAGTACTACATGTTGTTGCCGGGTCCTCCGCATGAAATGAAACCGATGTTC
AGGATTTACGGTCGAGAAGCCATCTTGGACCAGCTTGAACAACAGGAGCGCATTGAATCGCGGGTTCTTCGTTTTTTTAA
TATTGGTGAATCACAAATAGCCCATGAGCTTTCGGATCTCATAGAATCGCAATCCAATCCGACCGTGGCCCCGCTTGCCG
GTGATGGTGAAGTGACGATTAGAATTACGGCCAGGCATGAACAAGAAGTCATGGCGGTTTCGATGCTGGATGATATTGAA
AAACGAATATTAGAGAGAGTGGGGGAATATTTTTACGGATATGATGATACTTCCCTCATGGCTGAATTGCTGAAATTGCT
TGAAGAGCGCCAGTTGACCATTGCCGCAGCAGAAAGTTTGACCGGCGGCTTGTTCCAGTCGGAAATGACATCAGTTGTTG
GTGTAAGCACCATGCTGCTTGGCGGGATTGTCTGTTATTCCAATAAAGCAAAAATCAAGCTTTGCAATGTTAAGCCGGAA
ACAATTGAAAAGCATGGCGCCGTCAGCGAACAATGTGCGGCAGAGCTTGCTTCAAACGTCCGCGAAGCTCTTGGTGCGGA
TATCGGAATCAGTTTTACCGGAGTTGCAGGCCCTGATTCACTTGAAGGCCATCCGGCGGGAACAGTCTGGATCGGCATTG
CTTTTAAAGACCAGCCAGCGAAGGCATTGCTTGCCAAAATGGCCGGAACCCGCAACGGAAATCGCAAACGTTCAGTAAAA
ATGGGTTGCTATCACTTATTAAAAGAATTACAAAAAAGTCGTAGAATTGACTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

56.204

98.561

0.554
  cinA Streptococcus pneumoniae TIGR4

45.933

100

0.46
  cinA Streptococcus pneumoniae Rx1

45.694

100

0.458
  cinA Streptococcus mitis SK321

45.694

100

0.458
  cinA Streptococcus pneumoniae R6

45.694

100

0.458
  cinA Streptococcus pneumoniae D39

45.455

100

0.456
  cinA Streptococcus mitis NCTC 12261

45.455

100

0.456
  cinA Streptococcus mutans UA159

46.561

90.647

0.422
  cinA Streptococcus suis isolate S10

41.689

90.887

0.379

Multiple sequence alignment