Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   WHL51_RS08875 Genome accession   NZ_CP148102
Coordinates   1721677..1722723 (+) Length   348 a.a.
NCBI ID   WP_003221008.1    Uniprot ID   E0TV17
Organism   Bacillus spizizenii str. W23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1716677..1727723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL51_RS08845 ymfI 1716684..1717412 (+) 729 WP_003220995.1 elongation factor P 5-aminopentanone reductase -
  WHL51_RS08850 - 1717493..1717750 (+) 258 WP_003220996.1 DUF3243 domain-containing protein -
  WHL51_RS08855 - 1717880..1718671 (+) 792 WP_003220998.1 YmfK family protein -
  WHL51_RS08860 rodZ 1718738..1719604 (+) 867 WP_202892724.1 cell shape determination protein RodZ -
  WHL51_RS08865 pgsA 1719655..1720236 (+) 582 WP_003221002.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WHL51_RS08870 cinA 1720254..1721504 (+) 1251 WP_003221005.1 competence/damage-inducible protein A Machinery gene
  WHL51_RS08875 recA 1721677..1722723 (+) 1047 WP_003221008.1 recombinase RecA Machinery gene
  WHL51_RS08880 - 1722893..1724068 (+) 1176 WP_003221009.1 serine hydrolase -
  WHL51_RS08885 rny 1724344..1725906 (+) 1563 WP_003221010.1 ribonuclease Y -
  WHL51_RS08890 ymdB 1725976..1726770 (+) 795 WP_003221012.1 2',3'-cyclic-nucleotide 2'-phosphodiesterase -
  WHL51_RS08895 spoVS 1726969..1727229 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37954.07 Da        Isoelectric Point: 4.8458

>NTDB_id=950427 WHL51_RS08875 WP_003221008.1 1721677..1722723(+) (recA) [Bacillus spizizenii str. W23]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNHGAAQQQAGETQEELEFEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=950427 WHL51_RS08875 WP_003221008.1 1721677..1722723(+) (recA) [Bacillus spizizenii str. W23]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTCGGCAAAGGTTCTATTATGAAACT
GGGAGAAAAGACAGATACAAGAATTTCTACTGTCCCAAGCGGCTCCCTCGCTCTTGATACAGCACTAGGAATTGGCGGAT
ATCCGCGCGGACGGATTATTGAAGTATATGGTCCTGAAAGCTCAGGTAAAACAACTGTGGCGCTTCATGCGATTGCTGAG
GTTCAGCAGCAGGGCGGACAAGCCGCGTTTATCGATGCGGAGCATGCGTTAGATCCGGTATACGCGCAAAAGCTTGGAGT
CAATATCGAAGAGCTTTTACTGTCTCAGCCTGACACAGGTGAGCAGGCGCTTGAAATTGCGGAAGCGCTGGTTCGAAGCG
GTGCAGTTGACATTGTTGTTGTCGACTCTGTGGCGGCTCTCGTTCCGAAAGCGGAAATTGAAGGCGACATGGGAGATTCG
CATGTCGGTTTACAAGCTCGCTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGGGCCATTAACAAATCGAAGACAATCGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTCGGGAACCCGGAAACAACTCCTGGCGGCCGCGCGCTGA
AATTCTACTCTTCCGTGCGTCTTGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAACGACGTAATGGGGAACAAAACG
AAAATCAAAGTCGTGAAAAACAAGGTAGCTCCGCCGTTCCGTACAGCCGAGGTTGACATTATGTACGGAGAAGGCATCTC
AAAAGAAGGCGAAATCATTGATCTTGGAACTGAACTTGATATCGTGCAAAAAAGCGGTTCATGGTATTCTTATGAAGAAG
AGCGTCTTGGCCAAGGCCGTGAAAATGCAAAACAATTCTTGAAAGAAAATAAAGATATCATGCTGATGATCCAGGAGCAA
ATTCGCGAACATTACGGCTTGGATAATCACGGAGCAGCGCAGCAGCAAGCTGGAGAGACACAAGAAGAACTCGAATTTGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0TV17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

98.851

100

0.989
  recA Latilactobacillus sakei subsp. sakei 23K

74.924

93.966

0.704
  recA Streptococcus pneumoniae R6

65.909

100

0.667
  recA Streptococcus pneumoniae Rx1

65.909

100

0.667
  recA Streptococcus pneumoniae D39

65.909

100

0.667
  recA Streptococcus pneumoniae TIGR4

65.909

100

0.667
  recA Streptococcus mitis SK321

66.86

98.851

0.661
  recA Streptococcus mitis NCTC 12261

68.788

94.828

0.652
  recA Streptococcus mutans UA159

68.389

94.54

0.647
  recA Streptococcus pyogenes NZ131

67.683

94.253

0.638
  recA Neisseria gonorrhoeae strain FA1090

63.478

99.138

0.629
  recA Neisseria gonorrhoeae MS11

63.478

99.138

0.629
  recA Neisseria gonorrhoeae MS11

63.478

99.138

0.629
  recA Lactococcus lactis subsp. cremoris KW2

65.758

94.828

0.624
  recA Helicobacter pylori 26695

65.231

93.391

0.609
  recA Helicobacter pylori strain NCTC11637

65.231

93.391

0.609
  recA Acinetobacter baylyi ADP1

60.231

99.713

0.601
  recA Ralstonia pseudosolanacearum GMI1000

65.723

91.379

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

93.966

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.914

93.966

0.601
  recA Glaesserella parasuis strain SC1401

60

99.138

0.595
  recA Acinetobacter baumannii D1279779

59.71

99.138

0.592
  recA Vibrio cholerae strain A1552

63.863

92.241

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.863

92.241

0.589
  recA Pseudomonas stutzeri DSM 10701

62.813

91.954

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

92.816

0.563