Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   WHL51_RS08870 Genome accession   NZ_CP148102
Coordinates   1720254..1721504 (+) Length   416 a.a.
NCBI ID   WP_003221005.1    Uniprot ID   E0TV16
Organism   Bacillus spizizenii str. W23     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1715254..1726504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL51_RS08840 yfmH 1715345..1716631 (+) 1287 WP_003220993.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  WHL51_RS08845 ymfI 1716684..1717412 (+) 729 WP_003220995.1 elongation factor P 5-aminopentanone reductase -
  WHL51_RS08850 - 1717493..1717750 (+) 258 WP_003220996.1 DUF3243 domain-containing protein -
  WHL51_RS08855 - 1717880..1718671 (+) 792 WP_003220998.1 YmfK family protein -
  WHL51_RS08860 rodZ 1718738..1719604 (+) 867 WP_202892724.1 cell shape determination protein RodZ -
  WHL51_RS08865 pgsA 1719655..1720236 (+) 582 WP_003221002.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WHL51_RS08870 cinA 1720254..1721504 (+) 1251 WP_003221005.1 competence/damage-inducible protein A Machinery gene
  WHL51_RS08875 recA 1721677..1722723 (+) 1047 WP_003221008.1 recombinase RecA Machinery gene
  WHL51_RS08880 - 1722893..1724068 (+) 1176 WP_003221009.1 serine hydrolase -
  WHL51_RS08885 rny 1724344..1725906 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45541.88 Da        Isoelectric Point: 5.3857

>NTDB_id=950426 WHL51_RS08870 WP_003221005.1 1720254..1721504(+) (cinA) [Bacillus spizizenii str. W23]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANALGRPLVLNEEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKGLTISAAESFTGGLFSEWLTDLSGASKRFAGGVVCYTNDVKQNVLG
VKKETLDQFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDTQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=950426 WHL51_RS08870 WP_003221005.1 1720254..1721504(+) (cinA) [Bacillus spizizenii str. W23]
ATGGAATTTCCAAAAAAAGCAGAAATTATTGCAGTCGGTTCAGAGCTGCTGCTTGGCCAGATCGCTAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGGGTGAACGTATTTTATCATACAGCAGTCGGAGATAACCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGTTCTGACTTCATTATCTTTTCAGGAGGTCTCGGACCGACAAAAGATGATTTG
ACGAAAGAAACGATTGCAAATGCGCTGGGACGTCCGCTTGTGTTAAATGAAGAGGCGTTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGATCTGACGTACTGGCAAATC
ACTTTGGAATGGCACCGGGAATGCTCACAGAGCATGAATCGCGCTTTTATATGCTTCTTCCTGGGCCGCCAAGCGAATTG
CGTCCCATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAAATGGGTTCAAATGAAAAAATTGTGTCAACCGTTCT
TCGCTTTTTCGGTATCGGTGAATCTCAGCTTGAAGCCGATTTGGAAGATATTATTGATGCACAAACCAACCCGACAATCG
CTCCATTGGCGGCAGATGGAGAGGTGACGCTGCGTCTGACAGCCAAGCATGCTGACGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCTGTTATTTTAGAACGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCCCTTGTAAAAGAGCT
TTCTAAAGCATGTAAGGAAAAAGGCCTTACGATTTCCGCGGCGGAAAGCTTTACCGGCGGGCTGTTTTCTGAATGGCTGA
CGGATCTTAGCGGTGCTTCAAAACGATTTGCCGGCGGCGTTGTTTGCTATACAAACGACGTGAAACAGAATGTGCTTGGC
GTCAAGAAGGAGACATTAGATCAATTTGGCGCGGTCAGCAAGGAGTGCGCATCAGAGCTGGCAAAGGGTGTTCAAAAGCT
CACTGGCAGCGACATCGGCATCAGCTTTACCGGTGTAGCAGGACCTGATACTCAAGAAGGGCATGAGCCTGGACATGTGT
TTATCGGTATTTCAGCAAATGGAAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGTTCCAGAACGGGAATCAGAAAACGC
GGTGCTAAATACGGCTGTCATTTAATCTTGAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0TV16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

97.837

100

0.978
  cinA Streptococcus mitis NCTC 12261

45.694

100

0.459
  cinA Streptococcus mitis SK321

45.694

100

0.459
  cinA Streptococcus pneumoniae TIGR4

45.455

100

0.457
  cinA Streptococcus mutans UA159

46.005

99.279

0.457
  cinA Streptococcus pneumoniae Rx1

45.215

100

0.454
  cinA Streptococcus pneumoniae R6

45.215

100

0.454
  cinA Streptococcus pneumoniae D39

44.976

100

0.452
  cinA Streptococcus suis isolate S10

41.645

90.625

0.377