Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WFA81_RS09895 | Genome accession | NZ_CP147890 |
| Coordinates | 2043020..2044081 (-) | Length | 353 a.a. |
| NCBI ID | WP_003598111.1 | Uniprot ID | A0A243PT23 |
| Organism | Lacticaseibacillus paracasei strain CUDS0725 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2039113..2072347 | 2043020..2044081 | within | 0 |
Gene organization within MGE regions
Location: 2039113..2072347
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WFA81_RS09880 | - | 2039113..2040375 (-) | 1263 | WP_016379935.1 | helicase-related protein | - |
| WFA81_RS09885 | - | 2040403..2041053 (+) | 651 | WP_012491283.1 | YigZ family protein | - |
| WFA81_RS09890 | rny | 2041147..2042718 (-) | 1572 | WP_003657913.1 | ribonuclease Y | - |
| WFA81_RS09895 | recA | 2043020..2044081 (-) | 1062 | WP_003598111.1 | recombinase RecA | Machinery gene |
| WFA81_RS09900 | cinA | 2044138..2045379 (-) | 1242 | WP_012491282.1 | competence/damage-inducible protein A | Machinery gene |
| WFA81_RS09905 | pgsA | 2045754..2046347 (-) | 594 | WP_003564171.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WFA81_RS09910 | - | 2046344..2047273 (-) | 930 | WP_003593861.1 | helix-turn-helix domain-containing protein | - |
| WFA81_RS09915 | - | 2047360..2048088 (-) | 729 | WP_003569514.1 | SDR family oxidoreductase | - |
| WFA81_RS09920 | - | 2048088..2049380 (-) | 1293 | WP_126139143.1 | pitrilysin family protein | - |
| WFA81_RS09925 | - | 2049377..2050639 (-) | 1263 | WP_012491281.1 | pitrilysin family protein | - |
| WFA81_RS09930 | - | 2050648..2052969 (-) | 2322 | WP_003604697.1 | DNA translocase FtsK | - |
| WFA81_RS09935 | - | 2053142..2053552 (-) | 411 | WP_003564159.1 | DUF1149 family protein | - |
| WFA81_RS09940 | trmL | 2053679..2054188 (-) | 510 | WP_003564157.1 | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | - |
| WFA81_RS09945 | - | 2054443..2055285 (-) | 843 | WP_012491280.1 | methyltransferase domain-containing protein | - |
| WFA81_RS09950 | - | 2055351..2056298 (+) | 948 | WP_003564155.1 | magnesium transporter CorA family protein | - |
| WFA81_RS09955 | - | 2056538..2057515 (+) | 978 | WP_024109435.1 | GMP reductase | - |
| WFA81_RS09960 | rpsN | 2057643..2057912 (+) | 270 | WP_003564153.1 | 30S ribosomal protein S14 | - |
| WFA81_RS09965 | - | 2058024..2058401 (-) | 378 | WP_014566472.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| WFA81_RS09970 | - | 2058673..2059713 (+) | 1041 | WP_012491278.1 | lactonase family protein | - |
| WFA81_RS09975 | - | 2059916..2060734 (+) | 819 | WP_014566471.1 | undecaprenyl-diphosphate phosphatase | - |
| WFA81_RS09980 | - | 2060756..2061391 (+) | 636 | WP_003569480.1 | copper homeostasis protein CutC | - |
| WFA81_RS09985 | - | 2061548..2062606 (+) | 1059 | WP_012491276.1 | FAD:protein FMN transferase | - |
| WFA81_RS09990 | - | 2062715..2063617 (-) | 903 | WP_012491275.1 | RluA family pseudouridine synthase | - |
| WFA81_RS09995 | - | 2063617..2064414 (-) | 798 | WP_003564146.1 | NAD kinase | - |
| WFA81_RS10000 | - | 2064416..2065087 (-) | 672 | WP_003564145.1 | GTP pyrophosphokinase family protein | - |
| WFA81_RS10005 | - | 2065281..2065874 (+) | 594 | WP_003601679.1 | CYTH domain-containing protein | - |
| WFA81_RS10010 | - | 2065944..2066579 (+) | 636 | WP_003601677.1 | DsbA family protein | - |
| WFA81_RS10015 | - | 2066769..2067824 (-) | 1056 | WP_003569473.1 | competence protein CoiA family protein | - |
| WFA81_RS10020 | - | 2067934..2069277 (-) | 1344 | WP_014951764.1 | PFL family protein | - |
| WFA81_RS10025 | - | 2069326..2069592 (-) | 267 | WP_003564140.1 | ACT domain-containing protein | - |
| WFA81_RS10030 | - | 2069783..2071111 (+) | 1329 | WP_012491272.1 | metallophosphoesterase | - |
| WFA81_RS10035 | - | 2071349..2072347 (+) | 999 | WP_012490951.1 | IS30 family transposase | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37745.94 Da Isoelectric Point: 5.8234
>NTDB_id=949297 WFA81_RS09895 WP_003598111.1 2043020..2044081(-) (recA) [Lacticaseibacillus paracasei strain CUDS0725]
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMAAAPGRETASVSEDQPEIHQQAEV
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMAAAPGRETASVSEDQPEIHQQAEV
Nucleotide
Download Length: 1062 bp
>NTDB_id=949297 WFA81_RS09895 WP_003598111.1 2043020..2044081(-) (recA) [Lacticaseibacillus paracasei strain CUDS0725]
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAAAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCGGACACGCGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGGGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCGATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCCGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGCG
CATTGAAGTTTTATGCGACTGTTCGGTTAGAAATCCGGCGGTCGGAACAGATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTGGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAAGCAGGGTCATGGTACGCGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGATAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCAGCCGCACCTGGTCGGGAGACGGCTTCGGTCAGTGAAGATCAACCCGAAAT
ACATCAACAGGCTGAAGTATGA
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAAAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCGGACACGCGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGGGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCGATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCCGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGCG
CATTGAAGTTTTATGCGACTGTTCGGTTAGAAATCCGGCGGTCGGAACAGATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTGGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAAGCAGGGTCATGGTACGCGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGATAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCAGCCGCACCTGGTCGGGAGACGGCTTCGGTCAGTGAAGATCAACCCGAAAT
ACATCAACAGGCTGAAGTATGA
Similar proteins
Only experimentally validated proteins are listed.