Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   V6U64_RS09805 Genome accession   NZ_CP145862
Coordinates   2110972..2112111 (-) Length   379 a.a.
NCBI ID   WP_410536628.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2105972..2117111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS09800 (V6U64_09805) spx 2110407..2110805 (-) 399 WP_002886328.1 transcriptional regulator Spx -
  V6U64_RS09805 (V6U64_09810) recA 2110972..2112111 (-) 1140 WP_410536628.1 recombinase RecA Machinery gene
  V6U64_RS09810 (V6U64_09815) cinA 2112147..2113415 (-) 1269 WP_080611071.1 competence/damage-inducible protein A Machinery gene
  V6U64_RS09815 (V6U64_09820) - 2113512..2114066 (-) 555 WP_080611069.1 DNA-3-methyladenine glycosylase I -
  V6U64_RS09820 (V6U64_09825) ruvA 2114075..2114665 (-) 591 WP_004181981.1 Holliday junction branch migration protein RuvA -
  V6U64_RS09825 (V6U64_09830) - 2114946..2116195 (+) 1250 Protein_1895 ISL3 family transposase -
  V6U64_RS09830 (V6U64_09835) - 2116242..2116463 (-) 222 WP_080611067.1 hypothetical protein -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40977.54 Da        Isoelectric Point: 4.7450

>NTDB_id=940478 V6U64_RS09805 WP_410536628.1 2110972..2112111(-) (recA) [Streptococcus salivarius strain KSS4]
MAKKTKKTEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYNGEKIGQGSE
NAKKYLADYPDIFEEIDHKVRVHYGLIEPDEEDIVEEAQVEETSDELVLDLDSTIEIEE

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=940478 V6U64_RS09805 WP_410536628.1 2110972..2112111(-) (recA) [Streptococcus salivarius strain KSS4]
GTGGCTAAGAAAACAAAGAAAACAGAAGAAATTACAAAGAAATTTGGAGATGAGCGTCGTAAAGCACTTGACGATGCTTT
GAAGAATATTGAAAAAGATTTTGGTAAGGGTGCGGTTATGCGTCTTGGTGAGCGTGCAGAGCAGAAAGTTCAAGTTATGA
GTTCAGGCTCGCTGGCTTTGGATATTGCTCTTGGTGCAGGTGGTTATCCTAAAGGTCGTATTATCGAAATTTACGGACCA
GAATCATCAGGTAAAACAACTGTAGCCCTCCATGCTGTTGCTCAGACACAAAAAGAAGGCGGAATTGCTGCCTTTATCGA
TGCAGAGCATGCCCTTGACCCTGCTTATGCGGCAGCCCTAGGTGTAAATATCGATGAACTTCTTTTGTCACAACCTGATT
CAGGTGAACAAGGTCTAGAAATTGCTGGTAAGCTGATTGACTCAGGTGCAGTTGATTTGGTTGTTGTTGACTCAGTTGCA
GCCTTGGTACCTCGTGCAGAAATTGATGGAGATATTGGTGATAGCCATGTCGGACTTCAAGCGCGTATGATGAGTCAAGC
CATGCGTAAGCTTTCTGCTTCTATCAATAAAACAAAAACAATTGCTATCTTCATTAACCAATTGCGTGAAAAAGTTGGTA
TTATGTTTGGTAATCCAGAAACAACCCCTGGTGGACGTGCTCTAAAATTCTATGCATCAGTACGTCTTGATGTACGTGGA
AATACGCAAATCAAAGGGACTGGTGATAAAAAAGACCAAAATGTTGGTAAGGAAACTAAAATTAAGGTTGTCAAAAACAA
GGTTGCTCCACCATTTAAAGAAGCCTTTGTTGAAATTATGTATGGTGAAGGGATTTCACAAACAGGTGAGCTTGTAAAAA
TCGCTAGTGACTTAGGTATTATTCAAAAAGCTGGAGCCTGGTTCTCATACAATGGAGAGAAGATTGGTCAAGGATCTGAA
AATGCGAAAAAATATTTGGCAGATTATCCAGATATTTTTGAAGAAATTGATCATAAAGTACGTGTACACTATGGTTTGAT
TGAACCAGATGAAGAGGATATTGTTGAAGAAGCACAAGTTGAAGAAACATCTGATGAACTTGTTTTAGACCTAGATTCAA
CCATTGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

89.295

100

0.902
  recA Streptococcus pyogenes NZ131

89.71

100

0.897
  recA Streptococcus mitis NCTC 12261

86.423

100

0.873
  recA Streptococcus mitis SK321

86.352

100

0.868
  recA Streptococcus pneumoniae Rx1

84.935

100

0.863
  recA Streptococcus pneumoniae D39

84.935

100

0.863
  recA Streptococcus pneumoniae R6

84.935

100

0.863
  recA Streptococcus pneumoniae TIGR4

84.935

100

0.863
  recA Lactococcus lactis subsp. cremoris KW2

77.714

92.348

0.718
  recA Latilactobacillus sakei subsp. sakei 23K

68.935

89.182

0.615
  recA Bacillus subtilis subsp. subtilis str. 168

68.389

86.807

0.594
  recA Glaesserella parasuis strain SC1401

56.216

97.625

0.549
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.472

89.446

0.541
  recA Acinetobacter baumannii D1279779

62.462

85.752

0.536
  recA Acinetobacter baylyi ADP1

62.154

85.752

0.533
  recA Neisseria gonorrhoeae MS11

60.725

87.335

0.53
  recA Neisseria gonorrhoeae MS11

60.725

87.335

0.53
  recA Neisseria gonorrhoeae strain FA1090

60.725

87.335

0.53
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

85.224

0.53
  recA Vibrio cholerae strain A1552

58.944

89.974

0.53
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.944

89.974

0.53
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.522

91.029

0.515
  recA Helicobacter pylori strain NCTC11637

56.305

89.974

0.507
  recA Helicobacter pylori 26695

56.305

89.974

0.507
  recA Ralstonia pseudosolanacearum GMI1000

57.576

87.071

0.501
  recA Pseudomonas stutzeri DSM 10701

58.154

85.752

0.499