Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V6U64_RS09810 Genome accession   NZ_CP145862
Coordinates   2112147..2113415 (-) Length   422 a.a.
NCBI ID   WP_080611071.1    Uniprot ID   A0A1V0GFM6
Organism   Streptococcus salivarius strain KSS4     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2107147..2118415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS09800 (V6U64_09805) spx 2110407..2110805 (-) 399 WP_002886328.1 transcriptional regulator Spx -
  V6U64_RS09805 (V6U64_09810) recA 2110972..2112111 (-) 1140 WP_410536628.1 recombinase RecA Machinery gene
  V6U64_RS09810 (V6U64_09815) cinA 2112147..2113415 (-) 1269 WP_080611071.1 competence/damage-inducible protein A Machinery gene
  V6U64_RS09815 (V6U64_09820) - 2113512..2114066 (-) 555 WP_080611069.1 DNA-3-methyladenine glycosylase I -
  V6U64_RS09820 (V6U64_09825) ruvA 2114075..2114665 (-) 591 WP_004181981.1 Holliday junction branch migration protein RuvA -
  V6U64_RS09825 (V6U64_09830) - 2114946..2116195 (+) 1250 Protein_1895 ISL3 family transposase -
  V6U64_RS09830 (V6U64_09835) - 2116242..2116463 (-) 222 WP_080611067.1 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45808.98 Da        Isoelectric Point: 4.9880

>NTDB_id=940479 V6U64_RS09810 WP_080611071.1 2112147..2113415(-) (cinA) [Streptococcus salivarius strain KSS4]
MKAELIAVGTEILTGQITNTNAQFLSEKLAELGIDVYFHTAVGDNENRLLSVLDQASQRSDLVILCGGLGPTEDDLTKQT
LAKFLGKELVFDEEASKKLDSFFATRPKHTRTPNNERQAQIVEGAIPLQNPTGLAVGGIITAQGVTYVVLPGPPSELKPM
VNQELIPALTENHSSLYSRVLRFFGVGESQLVTILKDFIVNQTDPTIAPYAKVGEVTLRLSTKASSQEEADQKLDVLEKQ
IRSTKTLDGKSLSDFIYGYGESNSLAFEAFRLLKHYGKTITAAESLTAGLFQASIADFSGASQVFKGGFVTYSIEEKAKM
LDIPLSQLEEHGVVSHFTAEKMAEGARDKTDSDYGIALTGVAGPDSLEGHPAGTVFIGIADRNQVRSIKVVIGGRSRSDV
RYISTLYAFNLVRQALLQEDMI

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=940479 V6U64_RS09810 WP_080611071.1 2112147..2113415(-) (cinA) [Streptococcus salivarius strain KSS4]
ATGAAAGCTGAATTGATTGCAGTAGGAACTGAAATCCTAACCGGGCAAATCACCAATACCAATGCCCAATTTTTATCTGA
GAAACTAGCTGAACTAGGAATTGACGTGTATTTTCACACAGCAGTAGGAGACAATGAAAATCGCCTACTTTCAGTTCTTG
ATCAGGCTAGTCAACGTAGTGATTTAGTCATACTTTGTGGTGGACTTGGCCCTACTGAGGACGACCTAACCAAGCAAACA
CTGGCTAAATTTTTAGGAAAAGAACTCGTTTTTGATGAGGAGGCTAGTAAAAAACTGGATAGTTTCTTTGCTACTCGTCC
TAAACACACACGAACGCCTAATAATGAACGTCAAGCACAAATTGTTGAGGGAGCTATTCCCTTGCAAAACCCGACAGGTC
TTGCAGTTGGAGGGATTATTACTGCTCAAGGGGTGACCTATGTAGTCTTACCTGGTCCACCAAGTGAACTCAAACCTATG
GTGAATCAAGAACTTATTCCAGCTCTTACTGAGAATCACTCAAGTCTTTATTCGAGAGTCCTAAGATTCTTCGGCGTTGG
GGAAAGTCAATTAGTGACTATTCTGAAGGATTTTATTGTTAACCAAACAGATCCAACCATAGCTCCATATGCTAAAGTGG
GGGAAGTAACACTTCGCTTGTCAACGAAGGCTTCTTCGCAAGAAGAAGCAGATCAAAAACTAGATGTTTTAGAAAAACAA
ATTCGTTCGACTAAAACTCTAGATGGCAAATCCTTATCTGATTTCATTTATGGATATGGAGAGTCTAATAGTTTAGCCTT
TGAAGCTTTTCGTTTGCTTAAGCACTATGGCAAGACCATCACTGCAGCTGAAAGCCTAACAGCAGGTTTATTTCAGGCTA
GTATTGCTGATTTTTCAGGGGCCTCACAAGTATTTAAAGGTGGATTTGTTACTTATAGCATTGAAGAAAAAGCTAAAATG
TTGGATATTCCCTTGTCGCAACTAGAAGAACATGGTGTTGTCAGTCATTTTACTGCAGAAAAAATGGCTGAAGGTGCTCG
AGATAAAACAGATAGCGATTATGGAATTGCACTTACCGGTGTAGCTGGACCAGATTCATTAGAAGGACACCCAGCAGGTA
CGGTATTTATTGGTATTGCTGATAGGAATCAAGTAAGGTCAATCAAGGTTGTTATAGGTGGAAGAAGTCGTTCTGATGTT
AGATATATTAGTACCCTCTATGCCTTTAACCTAGTTCGCCAAGCTTTATTACAAGAAGACATGATTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(264-415)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-243)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0GFM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

75.656

99.289

0.751
  cinA Streptococcus mitis NCTC 12261

74.94

99.289

0.744
  cinA Streptococcus pneumoniae TIGR4

74.224

99.289

0.737
  cinA Streptococcus pneumoniae Rx1

73.986

99.289

0.735
  cinA Streptococcus pneumoniae R6

73.986

99.289

0.735
  cinA Streptococcus pneumoniae D39

73.747

99.289

0.732
  cinA Streptococcus mutans UA159

71.942

98.815

0.711
  cinA Streptococcus suis isolate S10

55.288

98.578

0.545
  cinA Bacillus subtilis subsp. subtilis str. 168

45.131

99.763

0.45