Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | V6D01_RS07490 | Genome accession | NZ_CP145244 |
| Coordinates | 1546336..1547388 (-) | Length | 350 a.a. |
| NCBI ID | WP_002437037.1 | Uniprot ID | A0A4Q9WJI9 |
| Organism | Staphylococcus capitis subsp. urealyticus strain Sc1365670 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1544775..1608291 | 1546336..1547388 | within | 0 |
Gene organization within MGE regions
Location: 1544775..1608291
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6D01_RS07490 (V6D01_07470) | recA | 1546336..1547388 (-) | 1053 | WP_002437037.1 | recombinase RecA | Machinery gene |
| V6D01_RS07495 (V6D01_07475) | - | 1547557..1548705 (-) | 1149 | WP_023350376.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| V6D01_RS07500 (V6D01_07480) | pgsA | 1548848..1549429 (-) | 582 | WP_023350377.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| V6D01_RS07505 (V6D01_07485) | - | 1549457..1549849 (-) | 393 | WP_002436354.1 | helix-turn-helix domain-containing protein | - |
| V6D01_RS07510 (V6D01_07490) | - | 1549868..1550695 (-) | 828 | WP_002436330.1 | YmfK family protein | - |
| V6D01_RS07515 (V6D01_07495) | - | 1550854..1551561 (-) | 708 | WP_023350378.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| V6D01_RS07520 (V6D01_07500) | - | 1551561..1552847 (-) | 1287 | WP_023350379.1 | pitrilysin family protein | - |
| V6D01_RS07525 (V6D01_07505) | - | 1552847..1554121 (-) | 1275 | WP_023350380.1 | pitrilysin family protein | - |
| V6D01_RS07530 (V6D01_07510) | - | 1554163..1554873 (-) | 711 | WP_145387664.1 | GntR family transcriptional regulator | - |
| V6D01_RS07535 (V6D01_07515) | - | 1554876..1557296 (-) | 2421 | WP_023350382.1 | DNA translocase FtsK | - |
| V6D01_RS07540 (V6D01_07520) | - | 1557554..1559227 (-) | 1674 | WP_367122746.1 | ribonuclease J | - |
| V6D01_RS07545 (V6D01_07525) | pnp | 1559461..1561560 (-) | 2100 | WP_023350384.1 | polyribonucleotide nucleotidyltransferase | - |
| V6D01_RS07550 (V6D01_07530) | rpsO | 1561694..1561963 (-) | 270 | WP_002436359.1 | 30S ribosomal protein S15 | - |
| V6D01_RS07555 (V6D01_07535) | ribF | 1562085..1563056 (-) | 972 | WP_367122747.1 | riboflavin biosynthesis protein RibF | - |
| V6D01_RS07560 (V6D01_07540) | truB | 1563072..1563989 (-) | 918 | WP_367122748.1 | tRNA pseudouridine(55) synthase TruB | - |
| V6D01_RS07565 (V6D01_07545) | rbfA | 1564138..1564488 (-) | 351 | WP_002436301.1 | 30S ribosome-binding factor RbfA | - |
| V6D01_RS07570 (V6D01_07550) | infB | 1564645..1566819 (-) | 2175 | WP_023350386.1 | translation initiation factor IF-2 | - |
| V6D01_RS07575 (V6D01_07555) | - | 1566824..1567141 (-) | 318 | WP_367122749.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| V6D01_RS07580 (V6D01_07560) | - | 1567138..1567422 (-) | 285 | WP_002436310.1 | YlxR family protein | - |
| V6D01_RS07585 (V6D01_07565) | nusA | 1567439..1568662 (-) | 1224 | WP_002436342.1 | transcription termination factor NusA | - |
| V6D01_RS07590 (V6D01_07570) | rimP | 1568683..1569150 (-) | 468 | WP_002436317.1 | ribosome maturation factor RimP | - |
| V6D01_RS07595 (V6D01_07575) | - | 1569375..1573685 (-) | 4311 | WP_087671603.1 | PolC-type DNA polymerase III | - |
| V6D01_RS07600 (V6D01_07580) | - | 1573941..1575644 (-) | 1704 | WP_049326556.1 | proline--tRNA ligase | - |
| V6D01_RS07605 (V6D01_07585) | rseP | 1575664..1576950 (-) | 1287 | WP_367122750.1 | RIP metalloprotease RseP | - |
| V6D01_RS07610 (V6D01_07590) | - | 1577190..1577972 (-) | 783 | WP_002436308.1 | phosphatidate cytidylyltransferase | - |
| V6D01_RS07615 (V6D01_07595) | - | 1577976..1578746 (-) | 771 | WP_023350390.1 | isoprenyl transferase | - |
| V6D01_RS07620 (V6D01_07600) | frr | 1579027..1579581 (-) | 555 | WP_002436295.1 | ribosome recycling factor | - |
| V6D01_RS07625 (V6D01_07605) | pyrH | 1579598..1580320 (-) | 723 | WP_002436299.1 | UMP kinase | - |
| V6D01_RS07630 (V6D01_07610) | tsf | 1580457..1581335 (-) | 879 | WP_030064793.1 | translation elongation factor Ts | - |
| V6D01_RS07635 (V6D01_07615) | rpsB | 1581486..1582274 (-) | 789 | WP_002436327.1 | 30S ribosomal protein S2 | - |
| V6D01_RS07640 (V6D01_07620) | codY | 1582528..1583301 (-) | 774 | WP_002436324.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| V6D01_RS07645 (V6D01_07625) | hslU | 1583324..1584727 (-) | 1404 | WP_367122751.1 | ATP-dependent protease ATPase subunit HslU | - |
| V6D01_RS07650 (V6D01_07630) | hslV | 1584811..1585353 (-) | 543 | WP_023350393.1 | ATP-dependent protease subunit HslV | - |
| V6D01_RS07655 (V6D01_07635) | xerC | 1585357..1586247 (-) | 891 | WP_023350394.1 | tyrosine recombinase XerC | - |
| V6D01_RS07660 (V6D01_07640) | trmFO | 1586484..1587791 (-) | 1308 | WP_023350395.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| V6D01_RS07665 (V6D01_07645) | topA | 1587817..1589892 (-) | 2076 | WP_030064789.1 | type I DNA topoisomerase | - |
| V6D01_RS07670 (V6D01_07650) | dprA | 1590070..1590942 (-) | 873 | WP_023350397.1 | DNA-processing protein DprA | Machinery gene |
| V6D01_RS07675 (V6D01_07655) | sucD | 1591168..1592076 (-) | 909 | WP_002436344.1 | succinate--CoA ligase subunit alpha | - |
| V6D01_RS07680 (V6D01_07660) | sucC | 1592098..1593264 (-) | 1167 | WP_002436291.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| V6D01_RS07685 (V6D01_07665) | - | 1593372..1594142 (-) | 771 | WP_023350398.1 | ribonuclease HII | - |
| V6D01_RS07690 (V6D01_07670) | ylqF | 1594126..1595009 (-) | 884 | Protein_1455 | ribosome biogenesis GTPase YlqF | - |
| V6D01_RS07695 (V6D01_07675) | - | 1595289..1597889 (+) | 2601 | WP_023350400.1 | YfhO family protein | - |
| V6D01_RS07700 (V6D01_07680) | - | 1597882..1600488 (+) | 2607 | WP_023350401.1 | YfhO family protein | - |
| V6D01_RS07705 (V6D01_07685) | - | 1600968..1601174 (+) | 207 | WP_226859621.1 | hypothetical protein | - |
| V6D01_RS07710 (V6D01_07690) | - | 1601214..1601552 (+) | 339 | WP_023350404.1 | hypothetical protein | - |
| V6D01_RS07715 (V6D01_07695) | rplS | 1602129..1602479 (-) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| V6D01_RS07720 (V6D01_07700) | trmD | 1602585..1603322 (-) | 738 | WP_023350405.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| V6D01_RS07725 (V6D01_07705) | rimM | 1603322..1603825 (-) | 504 | WP_023350406.1 | ribosome maturation factor RimM | - |
| V6D01_RS07730 (V6D01_07710) | rpsP | 1604088..1604363 (-) | 276 | WP_367122752.1 | 30S ribosomal protein S16 | - |
| V6D01_RS07735 (V6D01_07715) | ffh | 1604791..1606158 (-) | 1368 | WP_002435148.1 | signal recognition particle protein | - |
| V6D01_RS07740 (V6D01_07720) | - | 1606188..1606520 (-) | 333 | WP_002435170.1 | putative DNA-binding protein | - |
| V6D01_RS07745 (V6D01_07725) | ftsY | 1606507..1607766 (-) | 1260 | WP_367122753.1 | signal recognition particle-docking protein FtsY | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37971.88 Da Isoelectric Point: 4.9318
>NTDB_id=938145 V6D01_RS07490 WP_002437037.1 1546336..1547388(-) (recA) [Staphylococcus capitis subsp. urealyticus strain Sc1365670]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
Nucleotide
Download Length: 1053 bp
>NTDB_id=938145 V6D01_RS07490 WP_002437037.1 1546336..1547388(-) (recA) [Staphylococcus capitis subsp. urealyticus strain Sc1365670]
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCTGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACATGCACTTGATCCTGTATACGCTCAAGCTTTAGG
CGTAGATATTGACAACTTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCAGTTGACATCGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAACTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAACTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAATGACATCGTTGATAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAACGTTAAAACTTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACGCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCTGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACATGCACTTGATCCTGTATACGCTCAAGCTTTAGG
CGTAGATATTGACAACTTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCAGTTGACATCGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAACTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAACTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAATGACATCGTTGATAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAACGTTAAAACTTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACGCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
Similar proteins
Only experimentally validated proteins are listed.