Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | V6C67_RS07765 | Genome accession | NZ_CP145238 |
| Coordinates | 1560737..1561789 (-) | Length | 350 a.a. |
| NCBI ID | WP_023350375.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis subsp. urealyticus strain Sc1365674 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1559176..1622692 | 1560737..1561789 | within | 0 |
Gene organization within MGE regions
Location: 1559176..1622692
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6C67_RS07765 (V6C67_07760) | recA | 1560737..1561789 (-) | 1053 | WP_023350375.1 | recombinase RecA | Machinery gene |
| V6C67_RS07770 (V6C67_07765) | - | 1561958..1563106 (-) | 1149 | WP_023350376.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| V6C67_RS07775 (V6C67_07770) | pgsA | 1563249..1563830 (-) | 582 | WP_023350377.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| V6C67_RS07780 (V6C67_07775) | - | 1563858..1564250 (-) | 393 | WP_002436354.1 | helix-turn-helix domain-containing protein | - |
| V6C67_RS07785 (V6C67_07780) | - | 1564269..1565096 (-) | 828 | WP_002436330.1 | YmfK family protein | - |
| V6C67_RS07790 (V6C67_07785) | - | 1565255..1565962 (-) | 708 | WP_023350378.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| V6C67_RS07795 (V6C67_07790) | - | 1565962..1567248 (-) | 1287 | WP_023350379.1 | pitrilysin family protein | - |
| V6C67_RS07800 (V6C67_07795) | - | 1567248..1568522 (-) | 1275 | WP_023350380.1 | pitrilysin family protein | - |
| V6C67_RS07805 (V6C67_07800) | - | 1568564..1569274 (-) | 711 | WP_023350381.1 | GntR family transcriptional regulator | - |
| V6C67_RS07810 (V6C67_07805) | - | 1569277..1571697 (-) | 2421 | WP_023350382.1 | DNA translocase FtsK | - |
| V6C67_RS07815 (V6C67_07810) | - | 1571955..1573628 (-) | 1674 | WP_002469869.1 | ribonuclease J | - |
| V6C67_RS07820 (V6C67_07815) | pnp | 1573862..1575961 (-) | 2100 | WP_367112169.1 | polyribonucleotide nucleotidyltransferase | - |
| V6C67_RS07825 (V6C67_07820) | rpsO | 1576095..1576364 (-) | 270 | WP_002436359.1 | 30S ribosomal protein S15 | - |
| V6C67_RS07830 (V6C67_07825) | ribF | 1576486..1577457 (-) | 972 | WP_002436322.1 | riboflavin biosynthesis protein RibF | - |
| V6C67_RS07835 (V6C67_07830) | truB | 1577473..1578390 (-) | 918 | WP_023350385.1 | tRNA pseudouridine(55) synthase TruB | - |
| V6C67_RS07840 (V6C67_07835) | rbfA | 1578539..1578889 (-) | 351 | WP_002436301.1 | 30S ribosome-binding factor RbfA | - |
| V6C67_RS07845 (V6C67_07840) | infB | 1579046..1581220 (-) | 2175 | WP_023350386.1 | translation initiation factor IF-2 | - |
| V6C67_RS07850 (V6C67_07845) | - | 1581225..1581542 (-) | 318 | WP_002436350.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| V6C67_RS07855 (V6C67_07850) | - | 1581539..1581823 (-) | 285 | WP_002436310.1 | YlxR family protein | - |
| V6C67_RS07860 (V6C67_07855) | nusA | 1581840..1583063 (-) | 1224 | WP_002436342.1 | transcription termination factor NusA | - |
| V6C67_RS07865 (V6C67_07860) | rimP | 1583084..1583551 (-) | 468 | WP_002436317.1 | ribosome maturation factor RimP | - |
| V6C67_RS07870 (V6C67_07865) | - | 1583776..1588086 (-) | 4311 | WP_087671603.1 | PolC-type DNA polymerase III | - |
| V6C67_RS07875 (V6C67_07870) | - | 1588342..1590045 (-) | 1704 | WP_049326556.1 | proline--tRNA ligase | - |
| V6C67_RS07880 (V6C67_07875) | rseP | 1590065..1591351 (-) | 1287 | WP_367112170.1 | RIP metalloprotease RseP | - |
| V6C67_RS07885 (V6C67_07880) | - | 1591591..1592373 (-) | 783 | WP_002436308.1 | phosphatidate cytidylyltransferase | - |
| V6C67_RS07890 (V6C67_07885) | - | 1592377..1593147 (-) | 771 | WP_023350390.1 | isoprenyl transferase | - |
| V6C67_RS07895 (V6C67_07890) | frr | 1593428..1593982 (-) | 555 | WP_002436295.1 | ribosome recycling factor | - |
| V6C67_RS07900 (V6C67_07895) | pyrH | 1593999..1594721 (-) | 723 | WP_002436299.1 | UMP kinase | - |
| V6C67_RS07905 (V6C67_07900) | tsf | 1594858..1595736 (-) | 879 | WP_030064793.1 | translation elongation factor Ts | - |
| V6C67_RS07910 (V6C67_07905) | rpsB | 1595887..1596675 (-) | 789 | WP_002436327.1 | 30S ribosomal protein S2 | - |
| V6C67_RS07915 (V6C67_07910) | codY | 1596929..1597702 (-) | 774 | WP_002436324.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| V6C67_RS07920 (V6C67_07915) | hslU | 1597725..1599128 (-) | 1404 | WP_023350392.1 | ATP-dependent protease ATPase subunit HslU | - |
| V6C67_RS07925 (V6C67_07920) | hslV | 1599212..1599754 (-) | 543 | WP_023350393.1 | ATP-dependent protease subunit HslV | - |
| V6C67_RS07930 (V6C67_07925) | xerC | 1599758..1600648 (-) | 891 | WP_023350394.1 | tyrosine recombinase XerC | - |
| V6C67_RS07935 (V6C67_07930) | trmFO | 1600885..1602192 (-) | 1308 | WP_023350395.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| V6C67_RS07940 (V6C67_07935) | topA | 1602218..1604293 (-) | 2076 | WP_030064789.1 | type I DNA topoisomerase | - |
| V6C67_RS07945 (V6C67_07940) | dprA | 1604471..1605343 (-) | 873 | WP_023350397.1 | DNA-processing protein DprA | Machinery gene |
| V6C67_RS07950 (V6C67_07945) | sucD | 1605569..1606477 (-) | 909 | WP_002436344.1 | succinate--CoA ligase subunit alpha | - |
| V6C67_RS07955 (V6C67_07950) | sucC | 1606499..1607665 (-) | 1167 | WP_002436291.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| V6C67_RS07960 (V6C67_07955) | - | 1607773..1608543 (-) | 771 | WP_023350398.1 | ribonuclease HII | - |
| V6C67_RS07965 (V6C67_07960) | ylqF | 1608527..1609410 (-) | 884 | Protein_1510 | ribosome biogenesis GTPase YlqF | - |
| V6C67_RS07970 (V6C67_07965) | - | 1609690..1612290 (+) | 2601 | WP_023350400.1 | YfhO family protein | - |
| V6C67_RS07975 (V6C67_07970) | - | 1612283..1614889 (+) | 2607 | WP_023350401.1 | YfhO family protein | - |
| V6C67_RS07980 (V6C67_07975) | - | 1615369..1615575 (+) | 207 | WP_226859621.1 | hypothetical protein | - |
| V6C67_RS07985 (V6C67_07980) | - | 1615615..1615953 (+) | 339 | WP_023350404.1 | hypothetical protein | - |
| V6C67_RS07990 (V6C67_07985) | rplS | 1616530..1616880 (-) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| V6C67_RS07995 (V6C67_07990) | trmD | 1616986..1617723 (-) | 738 | WP_023350405.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| V6C67_RS08000 (V6C67_07995) | rimM | 1617723..1618226 (-) | 504 | WP_023350406.1 | ribosome maturation factor RimM | - |
| V6C67_RS08005 (V6C67_08000) | rpsP | 1618489..1618764 (-) | 276 | WP_002453071.1 | 30S ribosomal protein S16 | - |
| V6C67_RS08010 (V6C67_08005) | ffh | 1619192..1620559 (-) | 1368 | WP_002435148.1 | signal recognition particle protein | - |
| V6C67_RS08015 (V6C67_08010) | - | 1620589..1620921 (-) | 333 | WP_002435170.1 | putative DNA-binding protein | - |
| V6C67_RS08020 (V6C67_08015) | ftsY | 1620908..1622167 (-) | 1260 | WP_023350407.1 | signal recognition particle-docking protein FtsY | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37913.85 Da Isoelectric Point: 5.0098
>NTDB_id=938080 V6C67_RS07765 WP_023350375.1 1560737..1561789(-) (recA) [Staphylococcus capitis subsp. urealyticus strain Sc1365674]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVGKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVGKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
Nucleotide
Download Length: 1053 bp
>NTDB_id=938080 V6C67_RS07765 WP_023350375.1 1560737..1561789(-) (recA) [Staphylococcus capitis subsp. urealyticus strain Sc1365674]
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCTGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACATGCACTTGATCCTGTATACGCTCAAGCTTTAGG
CGTAGATATTGACAACTTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCAGTTGACATCGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAACTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAACTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAATGACATCGTTGGTAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAACGTTAAAACTTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACGCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCTGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACATGCACTTGATCCTGTATACGCTCAAGCTTTAGG
CGTAGATATTGACAACTTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCAGTTGACATCGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAACTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAACTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAATGACATCGTTGGTAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAACGTTAAAACTTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACGCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.