Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | V6C68_RS08050 | Genome accession | NZ_CP145228 |
| Coordinates | 1662702..1663754 (-) | Length | 350 a.a. |
| NCBI ID | WP_023350375.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis subsp. urealyticus strain Sc1365695 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1661141..1724657 | 1662702..1663754 | within | 0 |
Gene organization within MGE regions
Location: 1661141..1724657
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6C68_RS08050 (V6C68_08040) | recA | 1662702..1663754 (-) | 1053 | WP_023350375.1 | recombinase RecA | Machinery gene |
| V6C68_RS08055 (V6C68_08045) | - | 1663923..1665071 (-) | 1149 | WP_023350376.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| V6C68_RS08060 (V6C68_08050) | pgsA | 1665214..1665795 (-) | 582 | WP_023350377.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| V6C68_RS08065 (V6C68_08055) | - | 1665823..1666215 (-) | 393 | WP_002436354.1 | helix-turn-helix domain-containing protein | - |
| V6C68_RS08070 (V6C68_08060) | - | 1666234..1667061 (-) | 828 | WP_002436330.1 | YmfK family protein | - |
| V6C68_RS08075 (V6C68_08065) | - | 1667220..1667927 (-) | 708 | WP_023350378.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| V6C68_RS08080 (V6C68_08070) | - | 1667927..1669213 (-) | 1287 | WP_023350379.1 | pitrilysin family protein | - |
| V6C68_RS08085 (V6C68_08075) | - | 1669213..1670487 (-) | 1275 | WP_023350380.1 | pitrilysin family protein | - |
| V6C68_RS08090 (V6C68_08080) | - | 1670529..1671239 (-) | 711 | WP_023350381.1 | GntR family transcriptional regulator | - |
| V6C68_RS08095 (V6C68_08085) | - | 1671242..1673662 (-) | 2421 | WP_023350382.1 | DNA translocase FtsK | - |
| V6C68_RS08100 (V6C68_08090) | - | 1673920..1675593 (-) | 1674 | WP_002469869.1 | ribonuclease J | - |
| V6C68_RS08105 (V6C68_08095) | pnp | 1675827..1677926 (-) | 2100 | WP_023350384.1 | polyribonucleotide nucleotidyltransferase | - |
| V6C68_RS08110 (V6C68_08100) | rpsO | 1678060..1678329 (-) | 270 | WP_002436359.1 | 30S ribosomal protein S15 | - |
| V6C68_RS08115 (V6C68_08105) | ribF | 1678451..1679422 (-) | 972 | WP_002436322.1 | riboflavin biosynthesis protein RibF | - |
| V6C68_RS08120 (V6C68_08110) | truB | 1679438..1680355 (-) | 918 | WP_023350385.1 | tRNA pseudouridine(55) synthase TruB | - |
| V6C68_RS08125 (V6C68_08115) | rbfA | 1680504..1680854 (-) | 351 | WP_002436301.1 | 30S ribosome-binding factor RbfA | - |
| V6C68_RS08130 (V6C68_08120) | infB | 1681011..1683185 (-) | 2175 | WP_023350386.1 | translation initiation factor IF-2 | - |
| V6C68_RS08135 (V6C68_08125) | - | 1683190..1683507 (-) | 318 | WP_002436350.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| V6C68_RS08140 (V6C68_08130) | - | 1683504..1683788 (-) | 285 | WP_002436310.1 | YlxR family protein | - |
| V6C68_RS08145 (V6C68_08135) | nusA | 1683805..1685028 (-) | 1224 | WP_002436342.1 | transcription termination factor NusA | - |
| V6C68_RS08150 (V6C68_08140) | rimP | 1685049..1685516 (-) | 468 | WP_002436317.1 | ribosome maturation factor RimP | - |
| V6C68_RS08155 (V6C68_08145) | - | 1685741..1690051 (-) | 4311 | WP_087671603.1 | PolC-type DNA polymerase III | - |
| V6C68_RS08160 (V6C68_08150) | - | 1690307..1692010 (-) | 1704 | WP_049326556.1 | proline--tRNA ligase | - |
| V6C68_RS08165 (V6C68_08155) | rseP | 1692030..1693316 (-) | 1287 | WP_023350389.1 | RIP metalloprotease RseP | - |
| V6C68_RS08170 (V6C68_08160) | - | 1693556..1694338 (-) | 783 | WP_002436308.1 | phosphatidate cytidylyltransferase | - |
| V6C68_RS08175 (V6C68_08165) | - | 1694342..1695112 (-) | 771 | WP_023350390.1 | isoprenyl transferase | - |
| V6C68_RS08180 (V6C68_08170) | frr | 1695393..1695947 (-) | 555 | WP_002436295.1 | ribosome recycling factor | - |
| V6C68_RS08185 (V6C68_08175) | pyrH | 1695964..1696686 (-) | 723 | WP_002436299.1 | UMP kinase | - |
| V6C68_RS08190 (V6C68_08180) | tsf | 1696823..1697701 (-) | 879 | WP_030064793.1 | translation elongation factor Ts | - |
| V6C68_RS08195 (V6C68_08185) | rpsB | 1697852..1698640 (-) | 789 | WP_002436327.1 | 30S ribosomal protein S2 | - |
| V6C68_RS08200 (V6C68_08190) | codY | 1698894..1699667 (-) | 774 | WP_002436324.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| V6C68_RS08205 (V6C68_08195) | hslU | 1699690..1701093 (-) | 1404 | WP_023350392.1 | ATP-dependent protease ATPase subunit HslU | - |
| V6C68_RS08210 (V6C68_08200) | hslV | 1701177..1701719 (-) | 543 | WP_023350393.1 | ATP-dependent protease subunit HslV | - |
| V6C68_RS08215 (V6C68_08205) | xerC | 1701723..1702613 (-) | 891 | WP_023350394.1 | tyrosine recombinase XerC | - |
| V6C68_RS08220 (V6C68_08210) | trmFO | 1702850..1704157 (-) | 1308 | WP_367027648.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| V6C68_RS08225 (V6C68_08215) | topA | 1704183..1706258 (-) | 2076 | WP_030064789.1 | type I DNA topoisomerase | - |
| V6C68_RS08230 (V6C68_08220) | dprA | 1706436..1707308 (-) | 873 | WP_023350397.1 | DNA-processing protein DprA | Machinery gene |
| V6C68_RS08235 (V6C68_08225) | sucD | 1707534..1708442 (-) | 909 | WP_002436344.1 | succinate--CoA ligase subunit alpha | - |
| V6C68_RS08240 (V6C68_08230) | sucC | 1708464..1709630 (-) | 1167 | WP_002436291.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| V6C68_RS08245 (V6C68_08235) | - | 1709738..1710508 (-) | 771 | WP_023350398.1 | ribonuclease HII | - |
| V6C68_RS08250 (V6C68_08240) | ylqF | 1710492..1711375 (-) | 884 | Protein_1586 | ribosome biogenesis GTPase YlqF | - |
| V6C68_RS08255 (V6C68_08245) | - | 1711655..1714255 (+) | 2601 | WP_023350400.1 | YfhO family protein | - |
| V6C68_RS08260 (V6C68_08250) | - | 1714248..1716854 (+) | 2607 | WP_023350401.1 | YfhO family protein | - |
| V6C68_RS08265 (V6C68_08255) | - | 1717301..1717540 (+) | 240 | WP_228071818.1 | hypothetical protein | - |
| V6C68_RS08270 (V6C68_08260) | - | 1717580..1717918 (+) | 339 | WP_023350404.1 | hypothetical protein | - |
| V6C68_RS08275 (V6C68_08265) | rplS | 1718495..1718845 (-) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| V6C68_RS08280 (V6C68_08270) | trmD | 1718951..1719688 (-) | 738 | WP_194380088.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| V6C68_RS08285 (V6C68_08275) | rimM | 1719688..1720191 (-) | 504 | WP_023350406.1 | ribosome maturation factor RimM | - |
| V6C68_RS08290 (V6C68_08280) | rpsP | 1720454..1720729 (-) | 276 | WP_002453071.1 | 30S ribosomal protein S16 | - |
| V6C68_RS08295 (V6C68_08285) | ffh | 1721157..1722524 (-) | 1368 | WP_002435148.1 | signal recognition particle protein | - |
| V6C68_RS08300 (V6C68_08290) | - | 1722554..1722886 (-) | 333 | WP_002435170.1 | putative DNA-binding protein | - |
| V6C68_RS08305 (V6C68_08295) | ftsY | 1722873..1724132 (-) | 1260 | WP_023350407.1 | signal recognition particle-docking protein FtsY | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37913.85 Da Isoelectric Point: 5.0098
>NTDB_id=937974 V6C68_RS08050 WP_023350375.1 1662702..1663754(-) (recA) [Staphylococcus capitis subsp. urealyticus strain Sc1365695]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVGKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVGKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
Nucleotide
Download Length: 1053 bp
>NTDB_id=937974 V6C68_RS08050 WP_023350375.1 1662702..1663754(-) (recA) [Staphylococcus capitis subsp. urealyticus strain Sc1365695]
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCTGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACATGCACTTGATCCTGTATACGCTCAAGCTTTAGG
CGTAGATATTGACAACTTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCAGTTGACATCGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAACTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAACTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAATGACATCGTTGGTAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAACGTTAAAACTTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACGCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCTGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACATGCACTTGATCCTGTATACGCTCAAGCTTTAGG
CGTAGATATTGACAACTTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCAGTTGACATCGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAACTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAACTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAATGACATCGTTGGTAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAACGTTAAAACTTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACGCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.