Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | V6C75_RS07630 | Genome accession | NZ_CP145221 |
| Coordinates | 1602218..1603270 (-) | Length | 350 a.a. |
| NCBI ID | WP_002437037.1 | Uniprot ID | A0A4Q9WJI9 |
| Organism | Staphylococcus capitis subsp. urealyticus strain Sc1365706 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1600656..1674837 | 1602218..1603270 | within | 0 |
Gene organization within MGE regions
Location: 1600656..1674837
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6C75_RS07630 | recA | 1602218..1603270 (-) | 1053 | WP_002437037.1 | recombinase RecA | Machinery gene |
| V6C75_RS07635 | - | 1603439..1604587 (-) | 1149 | WP_047796210.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| V6C75_RS07640 | pgsA | 1604730..1605311 (-) | 582 | WP_002469863.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| V6C75_RS07645 | - | 1605339..1605731 (-) | 393 | WP_002436354.1 | helix-turn-helix domain-containing protein | - |
| V6C75_RS07650 | - | 1605750..1606577 (-) | 828 | WP_002436330.1 | YmfK family protein | - |
| V6C75_RS07655 | ymfI | 1606735..1607442 (-) | 708 | WP_367080961.1 | elongation factor P 5-aminopentanone reductase | - |
| V6C75_RS07660 | yfmH | 1607442..1608728 (-) | 1287 | WP_030064811.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| V6C75_RS07665 | yfmF | 1608728..1610002 (-) | 1275 | WP_367080963.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| V6C75_RS07670 | - | 1610044..1610754 (-) | 711 | WP_037548864.1 | GntR family transcriptional regulator | - |
| V6C75_RS07675 | - | 1610757..1612220 (-) | 1464 | Protein_1475 | DNA translocase FtsK | - |
| V6C75_RS07680 | - | 1612316..1613171 (-) | 856 | Protein_1476 | DNA translocase FtsK 4TM domain-containing protein | - |
| V6C75_RS07685 | rnjB | 1613429..1615102 (-) | 1674 | WP_002469869.1 | ribonuclease J2 | - |
| V6C75_RS07690 | pnp | 1615336..1617435 (-) | 2100 | WP_047796205.1 | polyribonucleotide nucleotidyltransferase | - |
| V6C75_RS07695 | rpsO | 1617753..1618022 (-) | 270 | WP_002436359.1 | 30S ribosomal protein S15 | - |
| V6C75_RS07700 | ribF | 1618144..1619115 (-) | 972 | WP_002436322.1 | riboflavin biosynthesis protein RibF | - |
| V6C75_RS07705 | truB | 1619131..1620048 (-) | 918 | WP_047796204.1 | tRNA pseudouridine(55) synthase TruB | - |
| V6C75_RS07710 | rbfA | 1620197..1620547 (-) | 351 | WP_002436301.1 | 30S ribosome-binding factor RbfA | - |
| V6C75_RS07715 | infB | 1620704..1622869 (-) | 2166 | WP_030064804.1 | translation initiation factor IF-2 | - |
| V6C75_RS07720 | - | 1622874..1623191 (-) | 318 | WP_047796203.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| V6C75_RS07725 | rnpM | 1623188..1623472 (-) | 285 | WP_002436310.1 | RNase P modulator RnpM | - |
| V6C75_RS07730 | nusA | 1623489..1624712 (-) | 1224 | WP_002436342.1 | transcription termination factor NusA | - |
| V6C75_RS07735 | rimP | 1624733..1625200 (-) | 468 | WP_002436317.1 | ribosome maturation factor RimP | - |
| V6C75_RS07740 | - | 1625425..1629735 (-) | 4311 | WP_103157053.1 | PolC-type DNA polymerase III | - |
| V6C75_RS07745 | - | 1629991..1631694 (-) | 1704 | WP_047796201.1 | proline--tRNA ligase | - |
| V6C75_RS07750 | rseP | 1631714..1633000 (-) | 1287 | WP_047796200.1 | RIP metalloprotease RseP | - |
| V6C75_RS07755 | - | 1633238..1634020 (-) | 783 | WP_367080965.1 | phosphatidate cytidylyltransferase | - |
| V6C75_RS07760 | - | 1634024..1634794 (-) | 771 | WP_002436351.1 | isoprenyl transferase | - |
| V6C75_RS07765 | frr | 1635075..1635629 (-) | 555 | WP_002436295.1 | ribosome recycling factor | - |
| V6C75_RS07770 | pyrH | 1635646..1636368 (-) | 723 | WP_002436299.1 | UMP kinase | - |
| V6C75_RS07775 | tsf | 1636505..1637383 (-) | 879 | WP_030064793.1 | translation elongation factor Ts | - |
| V6C75_RS07780 | rpsB | 1637534..1638322 (-) | 789 | WP_002436327.1 | 30S ribosomal protein S2 | - |
| V6C75_RS07785 | codY | 1638576..1639349 (-) | 774 | WP_002436324.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| V6C75_RS07790 | hslU | 1639372..1640775 (-) | 1404 | WP_058121653.1 | ATP-dependent protease ATPase subunit HslU | - |
| V6C75_RS07795 | hslV | 1640859..1641401 (-) | 543 | WP_023350393.1 | ATP-dependent protease subunit HslV | - |
| V6C75_RS07800 | xerC | 1641405..1642295 (-) | 891 | WP_047796198.1 | tyrosine recombinase XerC | - |
| V6C75_RS07805 | trmFO | 1642532..1643839 (-) | 1308 | WP_030064791.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| V6C75_RS07810 | topA | 1643865..1645940 (-) | 2076 | WP_367081278.1 | type I DNA topoisomerase | - |
| V6C75_RS07815 | dprA | 1646118..1646990 (-) | 873 | WP_047796196.1 | DNA-processing protein DprA | Machinery gene |
| V6C75_RS07820 | sucD | 1647216..1648124 (-) | 909 | WP_002436344.1 | succinate--CoA ligase subunit alpha | - |
| V6C75_RS07825 | sucC | 1648146..1649312 (-) | 1167 | WP_002436291.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| V6C75_RS07830 | - | 1649420..1650190 (-) | 771 | WP_047796195.1 | ribonuclease HII | - |
| V6C75_RS07835 | ylqF | 1650174..1651057 (-) | 884 | Protein_1507 | ribosome biogenesis GTPase YlqF | - |
| V6C75_RS07840 | - | 1651337..1653937 (+) | 2601 | WP_367080966.1 | YfhO family protein | - |
| V6C75_RS07845 | - | 1653930..1656536 (+) | 2607 | WP_047796193.1 | YfhO family protein | - |
| V6C75_RS07850 | - | 1657261..1657599 (+) | 339 | WP_037548826.1 | hypothetical protein | - |
| V6C75_RS07855 | rplS | 1658176..1658526 (-) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| V6C75_RS07860 | trmD | 1658632..1659369 (-) | 738 | WP_047796192.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| V6C75_RS07865 | rimM | 1659369..1659872 (-) | 504 | WP_030064768.1 | ribosome maturation factor RimM | - |
| V6C75_RS07870 | rpsP | 1660135..1660410 (-) | 276 | WP_002453071.1 | 30S ribosomal protein S16 | - |
| V6C75_RS07875 | ffh | 1661025..1662392 (-) | 1368 | WP_047796191.1 | signal recognition particle protein | - |
| V6C75_RS07880 | - | 1662422..1662754 (-) | 333 | WP_002435170.1 | putative DNA-binding protein | - |
| V6C75_RS07885 | ftsY | 1662741..1664000 (-) | 1260 | WP_002435227.1 | signal recognition particle-docking protein FtsY | - |
| V6C75_RS07890 | smc | 1663997..1667566 (-) | 3570 | WP_103157071.1 | chromosome segregation protein SMC | - |
| V6C75_RS07895 | rnc | 1667693..1668406 (-) | 714 | WP_211181864.1 | ribonuclease III | - |
| V6C75_RS07900 | - | 1668547..1668780 (-) | 234 | WP_001830184.1 | acyl carrier protein | - |
| V6C75_RS07905 | fabG | 1669234..1669968 (-) | 735 | WP_002435264.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| V6C75_RS07910 | fabD | 1669961..1670887 (-) | 927 | WP_002435219.1 | ACP S-malonyltransferase | - |
| V6C75_RS07915 | plsX | 1670880..1671866 (-) | 987 | WP_002435190.1 | phosphate acyltransferase PlsX | - |
| V6C75_RS07920 | fapR | 1671859..1672428 (-) | 570 | WP_367080967.1 | transcription factor FapR | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37971.88 Da Isoelectric Point: 4.9318
>NTDB_id=937904 V6C75_RS07630 WP_002437037.1 1602218..1603270(-) (recA) [Staphylococcus capitis subsp. urealyticus strain Sc1365706]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
Nucleotide
Download Length: 1053 bp
>NTDB_id=937904 V6C75_RS07630 WP_002437037.1 1602218..1603270(-) (recA) [Staphylococcus capitis subsp. urealyticus strain Sc1365706]
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCTGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACATGCACTTGATCCTGTATACGCTCAAGCTTTAGG
CGTAGATATTGACAACTTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCAGTTGACATCGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAACTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAACCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAATTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAACGACATCGTTGATAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAACGTTAAAACGTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACGCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCTGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACATGCACTTGATCCTGTATACGCTCAAGCTTTAGG
CGTAGATATTGACAACTTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCAGTTGACATCGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAACTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAACCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAATTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAACGACATCGTTGATAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAACGTTAAAACGTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACGCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
Similar proteins
Only experimentally validated proteins are listed.