Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACET1R_RS05785 Genome accession   NZ_CP169008
Coordinates   1173761..1174276 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain UTAK-13     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1168761..1179276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACET1R_RS05735 (ACET1R_05735) csrA 1169207..1169392 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  ACET1R_RS05770 (ACET1R_05770) yqaB 1170991..1171557 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  ACET1R_RS05775 (ACET1R_05775) yqaA 1171554..1171982 (+) 429 WP_001287457.1 YqaA family protein -
  ACET1R_RS05780 (ACET1R_05780) gshA 1172055..1173611 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  ACET1R_RS05785 (ACET1R_05785) luxS 1173761..1174276 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  ACET1R_RS05790 (ACET1R_05790) emrB 1174340..1175878 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  ACET1R_RS05795 (ACET1R_05795) emrA 1175895..1177067 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  ACET1R_RS05800 (ACET1R_05800) emrR 1177194..1177724 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  ACET1R_RS05805 (ACET1R_05805) ygaH 1177815..1178150 (-) 336 WP_000119771.1 L-valine transporter subunit YgaH -
  ACET1R_RS05810 (ACET1R_05810) ygaZ 1178140..1178877 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=937906 ACET1R_RS05785 WP_001130207.1 1173761..1174276(+) (luxS) [Escherichia coli strain UTAK-13]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=937906 ACET1R_RS05785 WP_001130207.1 1173761..1174276(+) (luxS) [Escherichia coli strain UTAK-13]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731