Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V6C75_RS07815 Genome accession   NZ_CP145221
Coordinates   1646118..1646990 (-) Length   290 a.a.
NCBI ID   WP_047796196.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1365706     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1600656..1674837 1646118..1646990 within 0


Gene organization within MGE regions


Location: 1600656..1674837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C75_RS07630 recA 1602218..1603270 (-) 1053 WP_002437037.1 recombinase RecA Machinery gene
  V6C75_RS07635 - 1603439..1604587 (-) 1149 WP_047796210.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  V6C75_RS07640 pgsA 1604730..1605311 (-) 582 WP_002469863.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V6C75_RS07645 - 1605339..1605731 (-) 393 WP_002436354.1 helix-turn-helix domain-containing protein -
  V6C75_RS07650 - 1605750..1606577 (-) 828 WP_002436330.1 YmfK family protein -
  V6C75_RS07655 ymfI 1606735..1607442 (-) 708 WP_367080961.1 elongation factor P 5-aminopentanone reductase -
  V6C75_RS07660 yfmH 1607442..1608728 (-) 1287 WP_030064811.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  V6C75_RS07665 yfmF 1608728..1610002 (-) 1275 WP_367080963.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  V6C75_RS07670 - 1610044..1610754 (-) 711 WP_037548864.1 GntR family transcriptional regulator -
  V6C75_RS07675 - 1610757..1612220 (-) 1464 Protein_1475 DNA translocase FtsK -
  V6C75_RS07680 - 1612316..1613171 (-) 856 Protein_1476 DNA translocase FtsK 4TM domain-containing protein -
  V6C75_RS07685 rnjB 1613429..1615102 (-) 1674 WP_002469869.1 ribonuclease J2 -
  V6C75_RS07690 pnp 1615336..1617435 (-) 2100 WP_047796205.1 polyribonucleotide nucleotidyltransferase -
  V6C75_RS07695 rpsO 1617753..1618022 (-) 270 WP_002436359.1 30S ribosomal protein S15 -
  V6C75_RS07700 ribF 1618144..1619115 (-) 972 WP_002436322.1 riboflavin biosynthesis protein RibF -
  V6C75_RS07705 truB 1619131..1620048 (-) 918 WP_047796204.1 tRNA pseudouridine(55) synthase TruB -
  V6C75_RS07710 rbfA 1620197..1620547 (-) 351 WP_002436301.1 30S ribosome-binding factor RbfA -
  V6C75_RS07715 infB 1620704..1622869 (-) 2166 WP_030064804.1 translation initiation factor IF-2 -
  V6C75_RS07720 - 1622874..1623191 (-) 318 WP_047796203.1 L7Ae/L30e/S12e/Gadd45 family ribosomal protein -
  V6C75_RS07725 rnpM 1623188..1623472 (-) 285 WP_002436310.1 RNase P modulator RnpM -
  V6C75_RS07730 nusA 1623489..1624712 (-) 1224 WP_002436342.1 transcription termination factor NusA -
  V6C75_RS07735 rimP 1624733..1625200 (-) 468 WP_002436317.1 ribosome maturation factor RimP -
  V6C75_RS07740 - 1625425..1629735 (-) 4311 WP_103157053.1 PolC-type DNA polymerase III -
  V6C75_RS07745 - 1629991..1631694 (-) 1704 WP_047796201.1 proline--tRNA ligase -
  V6C75_RS07750 rseP 1631714..1633000 (-) 1287 WP_047796200.1 RIP metalloprotease RseP -
  V6C75_RS07755 - 1633238..1634020 (-) 783 WP_367080965.1 phosphatidate cytidylyltransferase -
  V6C75_RS07760 - 1634024..1634794 (-) 771 WP_002436351.1 isoprenyl transferase -
  V6C75_RS07765 frr 1635075..1635629 (-) 555 WP_002436295.1 ribosome recycling factor -
  V6C75_RS07770 pyrH 1635646..1636368 (-) 723 WP_002436299.1 UMP kinase -
  V6C75_RS07775 tsf 1636505..1637383 (-) 879 WP_030064793.1 translation elongation factor Ts -
  V6C75_RS07780 rpsB 1637534..1638322 (-) 789 WP_002436327.1 30S ribosomal protein S2 -
  V6C75_RS07785 codY 1638576..1639349 (-) 774 WP_002436324.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  V6C75_RS07790 hslU 1639372..1640775 (-) 1404 WP_058121653.1 ATP-dependent protease ATPase subunit HslU -
  V6C75_RS07795 hslV 1640859..1641401 (-) 543 WP_023350393.1 ATP-dependent protease subunit HslV -
  V6C75_RS07800 xerC 1641405..1642295 (-) 891 WP_047796198.1 tyrosine recombinase XerC -
  V6C75_RS07805 trmFO 1642532..1643839 (-) 1308 WP_030064791.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V6C75_RS07810 topA 1643865..1645940 (-) 2076 WP_367081278.1 type I DNA topoisomerase -
  V6C75_RS07815 dprA 1646118..1646990 (-) 873 WP_047796196.1 DNA-processing protein DprA Machinery gene
  V6C75_RS07820 sucD 1647216..1648124 (-) 909 WP_002436344.1 succinate--CoA ligase subunit alpha -
  V6C75_RS07825 sucC 1648146..1649312 (-) 1167 WP_002436291.1 ADP-forming succinate--CoA ligase subunit beta -
  V6C75_RS07830 - 1649420..1650190 (-) 771 WP_047796195.1 ribonuclease HII -
  V6C75_RS07835 ylqF 1650174..1651057 (-) 884 Protein_1507 ribosome biogenesis GTPase YlqF -
  V6C75_RS07840 - 1651337..1653937 (+) 2601 WP_367080966.1 YfhO family protein -
  V6C75_RS07845 - 1653930..1656536 (+) 2607 WP_047796193.1 YfhO family protein -
  V6C75_RS07850 - 1657261..1657599 (+) 339 WP_037548826.1 hypothetical protein -
  V6C75_RS07855 rplS 1658176..1658526 (-) 351 WP_002436293.1 50S ribosomal protein L19 -
  V6C75_RS07860 trmD 1658632..1659369 (-) 738 WP_047796192.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  V6C75_RS07865 rimM 1659369..1659872 (-) 504 WP_030064768.1 ribosome maturation factor RimM -
  V6C75_RS07870 rpsP 1660135..1660410 (-) 276 WP_002453071.1 30S ribosomal protein S16 -
  V6C75_RS07875 ffh 1661025..1662392 (-) 1368 WP_047796191.1 signal recognition particle protein -
  V6C75_RS07880 - 1662422..1662754 (-) 333 WP_002435170.1 putative DNA-binding protein -
  V6C75_RS07885 ftsY 1662741..1664000 (-) 1260 WP_002435227.1 signal recognition particle-docking protein FtsY -
  V6C75_RS07890 smc 1663997..1667566 (-) 3570 WP_103157071.1 chromosome segregation protein SMC -
  V6C75_RS07895 rnc 1667693..1668406 (-) 714 WP_211181864.1 ribonuclease III -
  V6C75_RS07900 - 1668547..1668780 (-) 234 WP_001830184.1 acyl carrier protein -
  V6C75_RS07905 fabG 1669234..1669968 (-) 735 WP_002435264.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  V6C75_RS07910 fabD 1669961..1670887 (-) 927 WP_002435219.1 ACP S-malonyltransferase -
  V6C75_RS07915 plsX 1670880..1671866 (-) 987 WP_002435190.1 phosphate acyltransferase PlsX -
  V6C75_RS07920 fapR 1671859..1672428 (-) 570 WP_367080967.1 transcription factor FapR -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33455.70 Da        Isoelectric Point: 9.5817

>NTDB_id=937906 V6C75_RS07815 WP_047796196.1 1646118..1646990(-) (dprA) [Staphylococcus capitis subsp. urealyticus strain Sc1365706]
MIQHTLLKLYWANFATTQVHQFIKEYPEVISENALIQNEMIEDWVKRQTSSTVRRKLSLFKSLNTEVIFQEMTKMNLKYL
TYFDKHYPQLLKEIYDFPYVIFYKGNKQLFNCPHTLAVIGSRKSTLYTTQALEYLFPSFKSLKMTIISGLAYGADSIAHQ
VALKNQLPTIGVLGFGHSYHYPKSSLKTRENIERKGLVISEYQPHSPITRYKFPERNRLISGLARGLLITEAEKISGSQI
TVDCALEQNRNVYVLPGSMFNPMTKSNLLRLQEGAQVVLDESSILSDYIF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=937906 V6C75_RS07815 WP_047796196.1 1646118..1646990(-) (dprA) [Staphylococcus capitis subsp. urealyticus strain Sc1365706]
GTGATTCAACACACTTTATTGAAGCTCTATTGGGCTAATTTCGCCACAACGCAAGTTCATCAATTTATTAAAGAATATCC
AGAAGTTATTTCAGAAAACGCACTAATTCAAAATGAGATGATTGAGGATTGGGTTAAAAGACAAACCTCATCCACAGTCA
GGAGAAAATTGAGCTTATTTAAATCACTTAATACAGAAGTTATATTTCAAGAAATGACTAAAATGAACCTCAAATATTTA
ACTTACTTTGATAAACATTATCCTCAATTACTTAAAGAAATTTATGATTTCCCATATGTAATTTTTTATAAAGGAAATAA
ACAACTATTTAATTGTCCTCATACTTTAGCTGTTATAGGCTCAAGAAAGTCAACTTTATATACAACTCAAGCTTTGGAAT
ATCTTTTCCCATCATTTAAATCACTAAAAATGACGATTATTTCAGGATTAGCATATGGTGCAGATAGTATAGCTCACCAA
GTTGCACTAAAAAATCAACTTCCAACAATAGGCGTTCTTGGCTTCGGCCATTCATATCATTATCCTAAATCATCATTAAA
GACAAGAGAGAATATCGAACGAAAAGGACTAGTTATAAGTGAGTATCAACCTCATTCTCCCATAACCAGATATAAATTTC
CTGAAAGAAATAGATTGATTAGTGGACTCGCTCGGGGTCTATTAATTACAGAAGCAGAGAAAATAAGCGGTAGTCAAATA
ACAGTAGACTGCGCTTTAGAACAAAACCGGAATGTATATGTTTTACCAGGATCAATGTTTAATCCTATGACCAAAAGTAA
TTTACTTAGACTTCAAGAGGGGGCACAAGTCGTTTTAGATGAAAGTAGTATTCTTTCAGACTACATTTTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

59.028

99.31

0.586
  dprA Staphylococcus aureus MW2

59.028

99.31

0.586