Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | V6C92_RS07715 | Genome accession | NZ_CP145216 |
| Coordinates | 1606458..1607510 (-) | Length | 350 a.a. |
| NCBI ID | WP_023350375.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis subsp. urealyticus strain Sc1365753 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1604897..1668413 | 1606458..1607510 | within | 0 |
Gene organization within MGE regions
Location: 1604897..1668413
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6C92_RS07715 (V6C92_07790) | recA | 1606458..1607510 (-) | 1053 | WP_023350375.1 | recombinase RecA | Machinery gene |
| V6C92_RS07720 (V6C92_07795) | - | 1607679..1608827 (-) | 1149 | WP_023350376.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| V6C92_RS07725 (V6C92_07800) | pgsA | 1608970..1609551 (-) | 582 | WP_023350377.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| V6C92_RS07730 (V6C92_07805) | - | 1609579..1609971 (-) | 393 | WP_002436354.1 | helix-turn-helix domain-containing protein | - |
| V6C92_RS07735 (V6C92_07810) | - | 1609990..1610817 (-) | 828 | WP_002436330.1 | YmfK family protein | - |
| V6C92_RS07740 (V6C92_07815) | ymfI | 1610976..1611683 (-) | 708 | WP_023350378.1 | elongation factor P 5-aminopentanone reductase | - |
| V6C92_RS07745 (V6C92_07820) | yfmH | 1611683..1612969 (-) | 1287 | WP_023350379.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| V6C92_RS07750 (V6C92_07825) | yfmF | 1612969..1614243 (-) | 1275 | WP_023350380.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| V6C92_RS07755 (V6C92_07830) | - | 1614285..1614995 (-) | 711 | WP_023350381.1 | GntR family transcriptional regulator | - |
| V6C92_RS07760 (V6C92_12595) | - | 1614998..1616458 (-) | 1461 | Protein_1489 | DNA translocase FtsK | - |
| V6C92_RS07765 (V6C92_12600) | - | 1616471..1617418 (-) | 948 | Protein_1490 | DNA translocase FtsK 4TM domain-containing protein | - |
| V6C92_RS07770 (V6C92_07840) | rnjB | 1617676..1619349 (-) | 1674 | WP_002469869.1 | ribonuclease J2 | - |
| V6C92_RS07775 (V6C92_07845) | pnp | 1619583..1621682 (-) | 2100 | WP_023350384.1 | polyribonucleotide nucleotidyltransferase | - |
| V6C92_RS07780 (V6C92_07850) | rpsO | 1621816..1622085 (-) | 270 | WP_002436359.1 | 30S ribosomal protein S15 | - |
| V6C92_RS07785 (V6C92_07855) | ribF | 1622207..1623178 (-) | 972 | WP_002436322.1 | riboflavin biosynthesis protein RibF | - |
| V6C92_RS07790 (V6C92_07860) | truB | 1623194..1624111 (-) | 918 | WP_023350385.1 | tRNA pseudouridine(55) synthase TruB | - |
| V6C92_RS07795 (V6C92_07865) | rbfA | 1624260..1624610 (-) | 351 | WP_002436301.1 | 30S ribosome-binding factor RbfA | - |
| V6C92_RS07800 (V6C92_07870) | infB | 1624767..1626941 (-) | 2175 | WP_023350386.1 | translation initiation factor IF-2 | - |
| V6C92_RS07805 (V6C92_07875) | - | 1626946..1627263 (-) | 318 | WP_002436350.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| V6C92_RS07810 (V6C92_07880) | rnpM | 1627260..1627544 (-) | 285 | WP_002436310.1 | RNase P modulator RnpM | - |
| V6C92_RS07815 (V6C92_07885) | nusA | 1627561..1628784 (-) | 1224 | WP_002436342.1 | transcription termination factor NusA | - |
| V6C92_RS07820 (V6C92_07890) | rimP | 1628805..1629272 (-) | 468 | WP_002436317.1 | ribosome maturation factor RimP | - |
| V6C92_RS07825 (V6C92_07895) | - | 1629497..1633807 (-) | 4311 | WP_087671603.1 | PolC-type DNA polymerase III | - |
| V6C92_RS07830 (V6C92_07900) | - | 1634063..1635766 (-) | 1704 | WP_049307487.1 | proline--tRNA ligase | - |
| V6C92_RS07835 (V6C92_07905) | rseP | 1635786..1637072 (-) | 1287 | WP_023350389.1 | RIP metalloprotease RseP | - |
| V6C92_RS07840 (V6C92_07910) | - | 1637312..1638094 (-) | 783 | WP_002436308.1 | phosphatidate cytidylyltransferase | - |
| V6C92_RS07845 (V6C92_07915) | - | 1638098..1638868 (-) | 771 | WP_023350390.1 | isoprenyl transferase | - |
| V6C92_RS07850 (V6C92_07920) | frr | 1639149..1639703 (-) | 555 | WP_002436295.1 | ribosome recycling factor | - |
| V6C92_RS07855 (V6C92_07925) | pyrH | 1639720..1640442 (-) | 723 | WP_002436299.1 | UMP kinase | - |
| V6C92_RS07860 (V6C92_07930) | tsf | 1640579..1641457 (-) | 879 | WP_023350391.1 | translation elongation factor Ts | - |
| V6C92_RS07865 (V6C92_07935) | rpsB | 1641608..1642396 (-) | 789 | WP_002436327.1 | 30S ribosomal protein S2 | - |
| V6C92_RS07870 (V6C92_07940) | codY | 1642650..1643423 (-) | 774 | WP_002436324.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| V6C92_RS07875 (V6C92_07945) | hslU | 1643446..1644849 (-) | 1404 | WP_023350392.1 | ATP-dependent protease ATPase subunit HslU | - |
| V6C92_RS07880 (V6C92_07950) | hslV | 1644933..1645475 (-) | 543 | WP_023350393.1 | ATP-dependent protease subunit HslV | - |
| V6C92_RS07885 (V6C92_07955) | xerC | 1645479..1646369 (-) | 891 | WP_023350394.1 | tyrosine recombinase XerC | - |
| V6C92_RS07890 (V6C92_07960) | trmFO | 1646606..1647913 (-) | 1308 | WP_023350395.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| V6C92_RS07895 (V6C92_07965) | topA | 1647939..1650014 (-) | 2076 | WP_030064789.1 | type I DNA topoisomerase | - |
| V6C92_RS07900 (V6C92_07970) | dprA | 1650192..1651064 (-) | 873 | WP_023350397.1 | DNA-processing protein DprA | Machinery gene |
| V6C92_RS07905 (V6C92_07975) | sucD | 1651290..1652198 (-) | 909 | WP_002436344.1 | succinate--CoA ligase subunit alpha | - |
| V6C92_RS07910 (V6C92_07980) | sucC | 1652220..1653386 (-) | 1167 | WP_002436291.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| V6C92_RS07915 (V6C92_07985) | - | 1653494..1654264 (-) | 771 | WP_023350398.1 | ribonuclease HII | - |
| V6C92_RS07920 (V6C92_07990) | ylqF | 1654248..1655131 (-) | 884 | Protein_1521 | ribosome biogenesis GTPase YlqF | - |
| V6C92_RS07925 (V6C92_07995) | - | 1655411..1658011 (+) | 2601 | WP_023350400.1 | YfhO family protein | - |
| V6C92_RS07930 (V6C92_08000) | - | 1658004..1660610 (+) | 2607 | WP_023350401.1 | YfhO family protein | - |
| V6C92_RS07935 (V6C92_08005) | - | 1661090..1661296 (+) | 207 | WP_226859621.1 | hypothetical protein | - |
| V6C92_RS07940 (V6C92_08010) | - | 1661336..1661674 (+) | 339 | WP_023350404.1 | hypothetical protein | - |
| V6C92_RS07945 (V6C92_08015) | rplS | 1662251..1662601 (-) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| V6C92_RS07950 (V6C92_08020) | trmD | 1662707..1663444 (-) | 738 | WP_023350405.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| V6C92_RS07955 (V6C92_08025) | rimM | 1663444..1663947 (-) | 504 | WP_023350406.1 | ribosome maturation factor RimM | - |
| V6C92_RS07960 (V6C92_08030) | rpsP | 1664210..1664485 (-) | 276 | WP_002453071.1 | 30S ribosomal protein S16 | - |
| V6C92_RS07965 (V6C92_08035) | ffh | 1664913..1666280 (-) | 1368 | WP_002435148.1 | signal recognition particle protein | - |
| V6C92_RS07970 (V6C92_08040) | - | 1666310..1666642 (-) | 333 | WP_002435170.1 | putative DNA-binding protein | - |
| V6C92_RS07975 (V6C92_08045) | ftsY | 1666629..1667888 (-) | 1260 | WP_023350407.1 | signal recognition particle-docking protein FtsY | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37913.85 Da Isoelectric Point: 5.0098
>NTDB_id=937835 V6C92_RS07715 WP_023350375.1 1606458..1607510(-) (recA) [Staphylococcus capitis subsp. urealyticus strain Sc1365753]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVGKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVGKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
Nucleotide
Download Length: 1053 bp
>NTDB_id=937835 V6C92_RS07715 WP_023350375.1 1606458..1607510(-) (recA) [Staphylococcus capitis subsp. urealyticus strain Sc1365753]
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCTGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACATGCACTTGATCCTGTATACGCTCAAGCTTTAGG
CGTAGATATTGACAACTTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCAGTTGACATCGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAACTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAACTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAATGACATCGTTGGTAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAACGTTAAAACTTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACGCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCTGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACATGCACTTGATCCTGTATACGCTCAAGCTTTAGG
CGTAGATATTGACAACTTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCAGTTGACATCGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAACTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAACTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAATGACATCGTTGGTAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAACGTTAAAACTTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACGCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.