Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V6C92_RS07900 Genome accession   NZ_CP145216
Coordinates   1650192..1651064 (-) Length   290 a.a.
NCBI ID   WP_023350397.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1365753     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1604897..1668413 1650192..1651064 within 0


Gene organization within MGE regions


Location: 1604897..1668413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C92_RS07715 (V6C92_07790) recA 1606458..1607510 (-) 1053 WP_023350375.1 recombinase RecA Machinery gene
  V6C92_RS07720 (V6C92_07795) - 1607679..1608827 (-) 1149 WP_023350376.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  V6C92_RS07725 (V6C92_07800) pgsA 1608970..1609551 (-) 582 WP_023350377.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V6C92_RS07730 (V6C92_07805) - 1609579..1609971 (-) 393 WP_002436354.1 helix-turn-helix domain-containing protein -
  V6C92_RS07735 (V6C92_07810) - 1609990..1610817 (-) 828 WP_002436330.1 YmfK family protein -
  V6C92_RS07740 (V6C92_07815) ymfI 1610976..1611683 (-) 708 WP_023350378.1 elongation factor P 5-aminopentanone reductase -
  V6C92_RS07745 (V6C92_07820) yfmH 1611683..1612969 (-) 1287 WP_023350379.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  V6C92_RS07750 (V6C92_07825) yfmF 1612969..1614243 (-) 1275 WP_023350380.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  V6C92_RS07755 (V6C92_07830) - 1614285..1614995 (-) 711 WP_023350381.1 GntR family transcriptional regulator -
  V6C92_RS07760 (V6C92_12595) - 1614998..1616458 (-) 1461 Protein_1489 DNA translocase FtsK -
  V6C92_RS07765 (V6C92_12600) - 1616471..1617418 (-) 948 Protein_1490 DNA translocase FtsK 4TM domain-containing protein -
  V6C92_RS07770 (V6C92_07840) rnjB 1617676..1619349 (-) 1674 WP_002469869.1 ribonuclease J2 -
  V6C92_RS07775 (V6C92_07845) pnp 1619583..1621682 (-) 2100 WP_023350384.1 polyribonucleotide nucleotidyltransferase -
  V6C92_RS07780 (V6C92_07850) rpsO 1621816..1622085 (-) 270 WP_002436359.1 30S ribosomal protein S15 -
  V6C92_RS07785 (V6C92_07855) ribF 1622207..1623178 (-) 972 WP_002436322.1 riboflavin biosynthesis protein RibF -
  V6C92_RS07790 (V6C92_07860) truB 1623194..1624111 (-) 918 WP_023350385.1 tRNA pseudouridine(55) synthase TruB -
  V6C92_RS07795 (V6C92_07865) rbfA 1624260..1624610 (-) 351 WP_002436301.1 30S ribosome-binding factor RbfA -
  V6C92_RS07800 (V6C92_07870) infB 1624767..1626941 (-) 2175 WP_023350386.1 translation initiation factor IF-2 -
  V6C92_RS07805 (V6C92_07875) - 1626946..1627263 (-) 318 WP_002436350.1 L7Ae/L30e/S12e/Gadd45 family ribosomal protein -
  V6C92_RS07810 (V6C92_07880) rnpM 1627260..1627544 (-) 285 WP_002436310.1 RNase P modulator RnpM -
  V6C92_RS07815 (V6C92_07885) nusA 1627561..1628784 (-) 1224 WP_002436342.1 transcription termination factor NusA -
  V6C92_RS07820 (V6C92_07890) rimP 1628805..1629272 (-) 468 WP_002436317.1 ribosome maturation factor RimP -
  V6C92_RS07825 (V6C92_07895) - 1629497..1633807 (-) 4311 WP_087671603.1 PolC-type DNA polymerase III -
  V6C92_RS07830 (V6C92_07900) - 1634063..1635766 (-) 1704 WP_049307487.1 proline--tRNA ligase -
  V6C92_RS07835 (V6C92_07905) rseP 1635786..1637072 (-) 1287 WP_023350389.1 RIP metalloprotease RseP -
  V6C92_RS07840 (V6C92_07910) - 1637312..1638094 (-) 783 WP_002436308.1 phosphatidate cytidylyltransferase -
  V6C92_RS07845 (V6C92_07915) - 1638098..1638868 (-) 771 WP_023350390.1 isoprenyl transferase -
  V6C92_RS07850 (V6C92_07920) frr 1639149..1639703 (-) 555 WP_002436295.1 ribosome recycling factor -
  V6C92_RS07855 (V6C92_07925) pyrH 1639720..1640442 (-) 723 WP_002436299.1 UMP kinase -
  V6C92_RS07860 (V6C92_07930) tsf 1640579..1641457 (-) 879 WP_023350391.1 translation elongation factor Ts -
  V6C92_RS07865 (V6C92_07935) rpsB 1641608..1642396 (-) 789 WP_002436327.1 30S ribosomal protein S2 -
  V6C92_RS07870 (V6C92_07940) codY 1642650..1643423 (-) 774 WP_002436324.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  V6C92_RS07875 (V6C92_07945) hslU 1643446..1644849 (-) 1404 WP_023350392.1 ATP-dependent protease ATPase subunit HslU -
  V6C92_RS07880 (V6C92_07950) hslV 1644933..1645475 (-) 543 WP_023350393.1 ATP-dependent protease subunit HslV -
  V6C92_RS07885 (V6C92_07955) xerC 1645479..1646369 (-) 891 WP_023350394.1 tyrosine recombinase XerC -
  V6C92_RS07890 (V6C92_07960) trmFO 1646606..1647913 (-) 1308 WP_023350395.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V6C92_RS07895 (V6C92_07965) topA 1647939..1650014 (-) 2076 WP_030064789.1 type I DNA topoisomerase -
  V6C92_RS07900 (V6C92_07970) dprA 1650192..1651064 (-) 873 WP_023350397.1 DNA-processing protein DprA Machinery gene
  V6C92_RS07905 (V6C92_07975) sucD 1651290..1652198 (-) 909 WP_002436344.1 succinate--CoA ligase subunit alpha -
  V6C92_RS07910 (V6C92_07980) sucC 1652220..1653386 (-) 1167 WP_002436291.1 ADP-forming succinate--CoA ligase subunit beta -
  V6C92_RS07915 (V6C92_07985) - 1653494..1654264 (-) 771 WP_023350398.1 ribonuclease HII -
  V6C92_RS07920 (V6C92_07990) ylqF 1654248..1655131 (-) 884 Protein_1521 ribosome biogenesis GTPase YlqF -
  V6C92_RS07925 (V6C92_07995) - 1655411..1658011 (+) 2601 WP_023350400.1 YfhO family protein -
  V6C92_RS07930 (V6C92_08000) - 1658004..1660610 (+) 2607 WP_023350401.1 YfhO family protein -
  V6C92_RS07935 (V6C92_08005) - 1661090..1661296 (+) 207 WP_226859621.1 hypothetical protein -
  V6C92_RS07940 (V6C92_08010) - 1661336..1661674 (+) 339 WP_023350404.1 hypothetical protein -
  V6C92_RS07945 (V6C92_08015) rplS 1662251..1662601 (-) 351 WP_002436293.1 50S ribosomal protein L19 -
  V6C92_RS07950 (V6C92_08020) trmD 1662707..1663444 (-) 738 WP_023350405.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  V6C92_RS07955 (V6C92_08025) rimM 1663444..1663947 (-) 504 WP_023350406.1 ribosome maturation factor RimM -
  V6C92_RS07960 (V6C92_08030) rpsP 1664210..1664485 (-) 276 WP_002453071.1 30S ribosomal protein S16 -
  V6C92_RS07965 (V6C92_08035) ffh 1664913..1666280 (-) 1368 WP_002435148.1 signal recognition particle protein -
  V6C92_RS07970 (V6C92_08040) - 1666310..1666642 (-) 333 WP_002435170.1 putative DNA-binding protein -
  V6C92_RS07975 (V6C92_08045) ftsY 1666629..1667888 (-) 1260 WP_023350407.1 signal recognition particle-docking protein FtsY -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33411.79 Da        Isoelectric Point: 9.7513

>NTDB_id=937837 V6C92_RS07900 WP_023350397.1 1650192..1651064(-) (dprA) [Staphylococcus capitis subsp. urealyticus strain Sc1365753]
MIQHTLLKLYWANFATTQVHQFIKEYPEVISENALIQNKMIEDWAKRQTSSTVRRKLSLFKSLNTEVIFQEMTKMNLKYL
TYFDKHYPQLLKEIYDFPYVIFYKGNKQLFNCPHTLAVIGSRKSTLYTTQALEYLFPSFKSLKMTIISGLAYGADSIAHQ
VALKNKLPTIGVLGFGHSYHYPKSSLKTRENIERKGLVISEYPPHSPITRYKFPERNRLISGLARGLLITEAEKISGSQI
TVDCALEQNRNVYVLPGSMFNPMTKSNLLRLQEGAQVVLDECSILSDYIF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=937837 V6C92_RS07900 WP_023350397.1 1650192..1651064(-) (dprA) [Staphylococcus capitis subsp. urealyticus strain Sc1365753]
GTGATTCAACACACTTTATTGAAGCTCTATTGGGCTAATTTCGCCACAACGCAAGTTCATCAATTTATTAAAGAATATCC
AGAAGTTATTTCAGAAAACGCACTAATTCAAAATAAGATGATTGAGGATTGGGCTAAAAGACAAACCTCATCCACAGTCA
GGAGAAAATTGAGCTTATTTAAATCACTTAATACAGAAGTTATATTTCAAGAAATGACTAAAATGAACCTCAAATATTTA
ACTTACTTTGATAAACATTATCCTCAATTACTTAAAGAAATTTATGATTTCCCATATGTAATTTTTTATAAAGGAAATAA
ACAACTATTTAATTGTCCTCATACTTTAGCTGTTATAGGCTCAAGAAAGTCAACCTTATATACAACTCAAGCTTTGGAAT
ATCTTTTCCCATCATTTAAATCACTAAAAATGACGATTATTTCAGGATTAGCATATGGTGCAGATAGTATAGCTCACCAA
GTCGCACTAAAAAATAAACTTCCAACAATAGGCGTTCTTGGCTTCGGCCATTCATATCATTATCCTAAATCATCTTTAAA
GACAAGAGAGAATATCGAACGAAAAGGACTAGTTATAAGTGAGTATCCACCTCATTCTCCCATAACCAGATATAAATTTC
CTGAAAGAAATAGATTGATTAGTGGACTCGCTCGGGGTCTATTAATTACAGAAGCAGAGAAAATAAGCGGTAGTCAAATA
ACAGTAGACTGCGCTTTAGAACAAAACCGGAATGTATATGTTTTACCAGGATCAATGTTTAATCCTATGACCAAAAGTAA
TTTACTTAGACTTCAAGAGGGGGCACAAGTCGTTTTAGATGAATGTAGTATTCTTTCAGACTACATTTTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

59.028

99.31

0.586
  dprA Staphylococcus aureus MW2

59.028

99.31

0.586