Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | V6C56_RS07325 | Genome accession | NZ_CP145208 |
| Coordinates | 1531142..1532194 (-) | Length | 350 a.a. |
| NCBI ID | WP_002437037.1 | Uniprot ID | A0A4Q9WJI9 |
| Organism | Staphylococcus capitis subsp. urealyticus strain Sc1516939 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1529581..1593203 | 1531142..1532194 | within | 0 |
Gene organization within MGE regions
Location: 1529581..1593203
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6C56_RS07325 (V6C56_07325) | recA | 1531142..1532194 (-) | 1053 | WP_002437037.1 | recombinase RecA | Machinery gene |
| V6C56_RS07330 (V6C56_07330) | - | 1532363..1533511 (-) | 1149 | WP_030064817.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| V6C56_RS07335 (V6C56_07335) | pgsA | 1533653..1534234 (-) | 582 | WP_002469863.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| V6C56_RS07340 (V6C56_07340) | - | 1534262..1534654 (-) | 393 | WP_030064815.1 | helix-turn-helix domain-containing protein | - |
| V6C56_RS07345 (V6C56_07345) | - | 1534673..1535500 (-) | 828 | WP_002436330.1 | YmfK family protein | - |
| V6C56_RS07350 (V6C56_07350) | - | 1535658..1536365 (-) | 708 | WP_023350378.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| V6C56_RS07355 (V6C56_07355) | - | 1536365..1537651 (-) | 1287 | WP_367009881.1 | pitrilysin family protein | - |
| V6C56_RS07360 (V6C56_07360) | - | 1537651..1538925 (-) | 1275 | WP_030064809.1 | pitrilysin family protein | - |
| V6C56_RS07365 (V6C56_07365) | - | 1538967..1539677 (-) | 711 | WP_002436349.1 | GntR family transcriptional regulator | - |
| V6C56_RS07370 (V6C56_07370) | - | 1539680..1542100 (-) | 2421 | WP_367009883.1 | DNA translocase FtsK | - |
| V6C56_RS07375 (V6C56_07375) | - | 1542358..1544031 (-) | 1674 | WP_002469869.1 | ribonuclease J | - |
| V6C56_RS07380 (V6C56_07380) | pnp | 1544265..1546364 (-) | 2100 | WP_030064806.1 | polyribonucleotide nucleotidyltransferase | - |
| V6C56_RS07385 (V6C56_07385) | rpsO | 1546682..1546951 (-) | 270 | WP_002436359.1 | 30S ribosomal protein S15 | - |
| V6C56_RS07390 (V6C56_07390) | ribF | 1547073..1548044 (-) | 972 | WP_002436322.1 | riboflavin biosynthesis protein RibF | - |
| V6C56_RS07395 (V6C56_07395) | truB | 1548060..1548977 (-) | 918 | WP_002436304.1 | tRNA pseudouridine(55) synthase TruB | - |
| V6C56_RS07400 (V6C56_07400) | rbfA | 1549126..1549476 (-) | 351 | WP_002436301.1 | 30S ribosome-binding factor RbfA | - |
| V6C56_RS07405 (V6C56_07405) | infB | 1549633..1551798 (-) | 2166 | WP_030064804.1 | translation initiation factor IF-2 | - |
| V6C56_RS07410 (V6C56_07410) | - | 1551803..1552120 (-) | 318 | WP_030064802.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| V6C56_RS07415 (V6C56_07415) | - | 1552117..1552401 (-) | 285 | WP_002436310.1 | YlxR family protein | - |
| V6C56_RS07420 (V6C56_07420) | nusA | 1552418..1553641 (-) | 1224 | WP_002436342.1 | transcription termination factor NusA | - |
| V6C56_RS07425 (V6C56_07425) | rimP | 1553662..1554129 (-) | 468 | WP_002436317.1 | ribosome maturation factor RimP | - |
| V6C56_RS07430 (V6C56_07430) | - | 1554355..1558665 (-) | 4311 | WP_141761280.1 | PolC-type DNA polymerase III | - |
| V6C56_RS07435 (V6C56_07435) | - | 1558921..1560624 (-) | 1704 | WP_070597783.1 | proline--tRNA ligase | - |
| V6C56_RS07440 (V6C56_07440) | rseP | 1560644..1561930 (-) | 1287 | WP_030064796.1 | RIP metalloprotease RseP | - |
| V6C56_RS07445 (V6C56_07445) | - | 1562170..1562952 (-) | 783 | WP_002436308.1 | phosphatidate cytidylyltransferase | - |
| V6C56_RS07450 (V6C56_07450) | - | 1562956..1563726 (-) | 771 | WP_002436351.1 | isoprenyl transferase | - |
| V6C56_RS07455 (V6C56_07455) | frr | 1564007..1564561 (-) | 555 | WP_002436295.1 | ribosome recycling factor | - |
| V6C56_RS07460 (V6C56_07460) | pyrH | 1564579..1565301 (-) | 723 | WP_002436299.1 | UMP kinase | - |
| V6C56_RS07465 (V6C56_07465) | tsf | 1565438..1566316 (-) | 879 | WP_030064793.1 | translation elongation factor Ts | - |
| V6C56_RS07470 (V6C56_07470) | rpsB | 1566467..1567255 (-) | 789 | WP_002436327.1 | 30S ribosomal protein S2 | - |
| V6C56_RS07475 (V6C56_07475) | codY | 1567508..1568281 (-) | 774 | WP_002436324.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| V6C56_RS07480 (V6C56_07480) | hslU | 1568304..1569707 (-) | 1404 | WP_367009884.1 | ATP-dependent protease ATPase subunit HslU | - |
| V6C56_RS07485 (V6C56_07485) | hslV | 1569791..1570333 (-) | 543 | WP_023350393.1 | ATP-dependent protease subunit HslV | - |
| V6C56_RS07490 (V6C56_07490) | xerC | 1570337..1571227 (-) | 891 | WP_023350394.1 | tyrosine recombinase XerC | - |
| V6C56_RS07495 (V6C56_07495) | trmFO | 1571464..1572771 (-) | 1308 | WP_030064791.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| V6C56_RS07500 (V6C56_07500) | topA | 1572797..1574872 (-) | 2076 | WP_030064789.1 | type I DNA topoisomerase | - |
| V6C56_RS07505 (V6C56_07505) | dprA | 1575050..1575922 (-) | 873 | WP_002436358.1 | DNA-processing protein DprA | Machinery gene |
| V6C56_RS07510 (V6C56_07510) | sucD | 1576148..1577056 (-) | 909 | WP_002436344.1 | succinate--CoA ligase subunit alpha | - |
| V6C56_RS07515 (V6C56_07515) | sucC | 1577078..1578244 (-) | 1167 | WP_002436291.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| V6C56_RS07520 (V6C56_07520) | - | 1578352..1579122 (-) | 771 | WP_030064786.1 | ribonuclease HII | - |
| V6C56_RS07525 (V6C56_07525) | ylqF | 1579106..1579989 (-) | 884 | Protein_1444 | ribosome biogenesis GTPase YlqF | - |
| V6C56_RS07530 (V6C56_07530) | - | 1580269..1582869 (+) | 2601 | WP_186334206.1 | YfhO family protein | - |
| V6C56_RS07535 (V6C56_07535) | - | 1582862..1585474 (+) | 2613 | WP_030064780.1 | YfhO family protein | - |
| V6C56_RS07540 (V6C56_07540) | - | 1585947..1586153 (+) | 207 | WP_227959510.1 | hypothetical protein | - |
| V6C56_RS07545 (V6C56_07545) | - | 1586193..1586531 (+) | 339 | WP_030064776.1 | hypothetical protein | - |
| V6C56_RS07550 (V6C56_07550) | rplS | 1587108..1587458 (-) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| V6C56_RS07555 (V6C56_07555) | trmD | 1587564..1588301 (-) | 738 | WP_030064770.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| V6C56_RS07560 (V6C56_07560) | rimM | 1588301..1588804 (-) | 504 | WP_030064768.1 | ribosome maturation factor RimM | - |
| V6C56_RS07565 (V6C56_07565) | rpsP | 1589067..1589342 (-) | 276 | WP_002453071.1 | 30S ribosomal protein S16 | - |
| V6C56_RS07570 (V6C56_07570) | ffh | 1589703..1591070 (-) | 1368 | WP_002435148.1 | signal recognition particle protein | - |
| V6C56_RS07575 (V6C56_07575) | - | 1591100..1591432 (-) | 333 | WP_002435170.1 | putative DNA-binding protein | - |
| V6C56_RS07580 (V6C56_07580) | ftsY | 1591419..1592678 (-) | 1260 | WP_030064764.1 | signal recognition particle-docking protein FtsY | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37971.88 Da Isoelectric Point: 4.9318
>NTDB_id=937767 V6C56_RS07325 WP_002437037.1 1531142..1532194(-) (recA) [Staphylococcus capitis subsp. urealyticus strain Sc1516939]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
Nucleotide
Download Length: 1053 bp
>NTDB_id=937767 V6C56_RS07325 WP_002437037.1 1531142..1532194(-) (recA) [Staphylococcus capitis subsp. urealyticus strain Sc1516939]
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCGGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACACGCACTTGATCCTGTGTACGCTCAAGCTTTAGG
CGTAGATATTGACAACTTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCAGTTGATATTGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATCGAAGGTGAAATGGGAGAT
ACACATGTCGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAATTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAACCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAATTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAACGACATCGTTGATAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAACGTTAAAACGTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACGCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCGGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACACGCACTTGATCCTGTGTACGCTCAAGCTTTAGG
CGTAGATATTGACAACTTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCAGTTGATATTGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATCGAAGGTGAAATGGGAGAT
ACACATGTCGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAATTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAACCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAATTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAACGACATCGTTGATAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAACGTTAAAACGTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACGCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
Similar proteins
Only experimentally validated proteins are listed.