Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V6C56_RS07505 Genome accession   NZ_CP145208
Coordinates   1575050..1575922 (-) Length   290 a.a.
NCBI ID   WP_002436358.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1516939     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1529581..1593203 1575050..1575922 within 0


Gene organization within MGE regions


Location: 1529581..1593203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C56_RS07325 (V6C56_07325) recA 1531142..1532194 (-) 1053 WP_002437037.1 recombinase RecA Machinery gene
  V6C56_RS07330 (V6C56_07330) - 1532363..1533511 (-) 1149 WP_030064817.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  V6C56_RS07335 (V6C56_07335) pgsA 1533653..1534234 (-) 582 WP_002469863.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V6C56_RS07340 (V6C56_07340) - 1534262..1534654 (-) 393 WP_030064815.1 helix-turn-helix domain-containing protein -
  V6C56_RS07345 (V6C56_07345) - 1534673..1535500 (-) 828 WP_002436330.1 YmfK family protein -
  V6C56_RS07350 (V6C56_07350) - 1535658..1536365 (-) 708 WP_023350378.1 SDR family NAD(P)-dependent oxidoreductase -
  V6C56_RS07355 (V6C56_07355) - 1536365..1537651 (-) 1287 WP_367009881.1 pitrilysin family protein -
  V6C56_RS07360 (V6C56_07360) - 1537651..1538925 (-) 1275 WP_030064809.1 pitrilysin family protein -
  V6C56_RS07365 (V6C56_07365) - 1538967..1539677 (-) 711 WP_002436349.1 GntR family transcriptional regulator -
  V6C56_RS07370 (V6C56_07370) - 1539680..1542100 (-) 2421 WP_367009883.1 DNA translocase FtsK -
  V6C56_RS07375 (V6C56_07375) - 1542358..1544031 (-) 1674 WP_002469869.1 ribonuclease J -
  V6C56_RS07380 (V6C56_07380) pnp 1544265..1546364 (-) 2100 WP_030064806.1 polyribonucleotide nucleotidyltransferase -
  V6C56_RS07385 (V6C56_07385) rpsO 1546682..1546951 (-) 270 WP_002436359.1 30S ribosomal protein S15 -
  V6C56_RS07390 (V6C56_07390) ribF 1547073..1548044 (-) 972 WP_002436322.1 riboflavin biosynthesis protein RibF -
  V6C56_RS07395 (V6C56_07395) truB 1548060..1548977 (-) 918 WP_002436304.1 tRNA pseudouridine(55) synthase TruB -
  V6C56_RS07400 (V6C56_07400) rbfA 1549126..1549476 (-) 351 WP_002436301.1 30S ribosome-binding factor RbfA -
  V6C56_RS07405 (V6C56_07405) infB 1549633..1551798 (-) 2166 WP_030064804.1 translation initiation factor IF-2 -
  V6C56_RS07410 (V6C56_07410) - 1551803..1552120 (-) 318 WP_030064802.1 ribosomal L7Ae/L30e/S12e/Gadd45 family protein -
  V6C56_RS07415 (V6C56_07415) - 1552117..1552401 (-) 285 WP_002436310.1 YlxR family protein -
  V6C56_RS07420 (V6C56_07420) nusA 1552418..1553641 (-) 1224 WP_002436342.1 transcription termination factor NusA -
  V6C56_RS07425 (V6C56_07425) rimP 1553662..1554129 (-) 468 WP_002436317.1 ribosome maturation factor RimP -
  V6C56_RS07430 (V6C56_07430) - 1554355..1558665 (-) 4311 WP_141761280.1 PolC-type DNA polymerase III -
  V6C56_RS07435 (V6C56_07435) - 1558921..1560624 (-) 1704 WP_070597783.1 proline--tRNA ligase -
  V6C56_RS07440 (V6C56_07440) rseP 1560644..1561930 (-) 1287 WP_030064796.1 RIP metalloprotease RseP -
  V6C56_RS07445 (V6C56_07445) - 1562170..1562952 (-) 783 WP_002436308.1 phosphatidate cytidylyltransferase -
  V6C56_RS07450 (V6C56_07450) - 1562956..1563726 (-) 771 WP_002436351.1 isoprenyl transferase -
  V6C56_RS07455 (V6C56_07455) frr 1564007..1564561 (-) 555 WP_002436295.1 ribosome recycling factor -
  V6C56_RS07460 (V6C56_07460) pyrH 1564579..1565301 (-) 723 WP_002436299.1 UMP kinase -
  V6C56_RS07465 (V6C56_07465) tsf 1565438..1566316 (-) 879 WP_030064793.1 translation elongation factor Ts -
  V6C56_RS07470 (V6C56_07470) rpsB 1566467..1567255 (-) 789 WP_002436327.1 30S ribosomal protein S2 -
  V6C56_RS07475 (V6C56_07475) codY 1567508..1568281 (-) 774 WP_002436324.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  V6C56_RS07480 (V6C56_07480) hslU 1568304..1569707 (-) 1404 WP_367009884.1 ATP-dependent protease ATPase subunit HslU -
  V6C56_RS07485 (V6C56_07485) hslV 1569791..1570333 (-) 543 WP_023350393.1 ATP-dependent protease subunit HslV -
  V6C56_RS07490 (V6C56_07490) xerC 1570337..1571227 (-) 891 WP_023350394.1 tyrosine recombinase XerC -
  V6C56_RS07495 (V6C56_07495) trmFO 1571464..1572771 (-) 1308 WP_030064791.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V6C56_RS07500 (V6C56_07500) topA 1572797..1574872 (-) 2076 WP_030064789.1 type I DNA topoisomerase -
  V6C56_RS07505 (V6C56_07505) dprA 1575050..1575922 (-) 873 WP_002436358.1 DNA-processing protein DprA Machinery gene
  V6C56_RS07510 (V6C56_07510) sucD 1576148..1577056 (-) 909 WP_002436344.1 succinate--CoA ligase subunit alpha -
  V6C56_RS07515 (V6C56_07515) sucC 1577078..1578244 (-) 1167 WP_002436291.1 ADP-forming succinate--CoA ligase subunit beta -
  V6C56_RS07520 (V6C56_07520) - 1578352..1579122 (-) 771 WP_030064786.1 ribonuclease HII -
  V6C56_RS07525 (V6C56_07525) ylqF 1579106..1579989 (-) 884 Protein_1444 ribosome biogenesis GTPase YlqF -
  V6C56_RS07530 (V6C56_07530) - 1580269..1582869 (+) 2601 WP_186334206.1 YfhO family protein -
  V6C56_RS07535 (V6C56_07535) - 1582862..1585474 (+) 2613 WP_030064780.1 YfhO family protein -
  V6C56_RS07540 (V6C56_07540) - 1585947..1586153 (+) 207 WP_227959510.1 hypothetical protein -
  V6C56_RS07545 (V6C56_07545) - 1586193..1586531 (+) 339 WP_030064776.1 hypothetical protein -
  V6C56_RS07550 (V6C56_07550) rplS 1587108..1587458 (-) 351 WP_002436293.1 50S ribosomal protein L19 -
  V6C56_RS07555 (V6C56_07555) trmD 1587564..1588301 (-) 738 WP_030064770.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  V6C56_RS07560 (V6C56_07560) rimM 1588301..1588804 (-) 504 WP_030064768.1 ribosome maturation factor RimM -
  V6C56_RS07565 (V6C56_07565) rpsP 1589067..1589342 (-) 276 WP_002453071.1 30S ribosomal protein S16 -
  V6C56_RS07570 (V6C56_07570) ffh 1589703..1591070 (-) 1368 WP_002435148.1 signal recognition particle protein -
  V6C56_RS07575 (V6C56_07575) - 1591100..1591432 (-) 333 WP_002435170.1 putative DNA-binding protein -
  V6C56_RS07580 (V6C56_07580) ftsY 1591419..1592678 (-) 1260 WP_030064764.1 signal recognition particle-docking protein FtsY -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33396.67 Da        Isoelectric Point: 9.6697

>NTDB_id=937769 V6C56_RS07505 WP_002436358.1 1575050..1575922(-) (dprA) [Staphylococcus capitis subsp. urealyticus strain Sc1516939]
MIQHTLLKLYWANFATTQVHQFIKEYPEVISENALIQNEMIEDWAKRQTSSTVRRKLSLFKSLNTEVIFQEMTKMNLKYL
TYFDKHYPQLLKEIYDFPYVIFYKGNKQLFNCPHTLAVIGSRKSTLYTTQALEYLFPSFKSLKMTIISGLAYGADSIAHQ
VALKNKLPTIGVLGFGHSYHYPKSSLKTRENIERKGLVISEYPPHSPITRYKFPERNRLISGLARGLLITEAEKISGSQI
TVDCALEQNRNVYVLPGSMFNPMTKSNLLRLQEGAQVVLDESSILSDYIF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=937769 V6C56_RS07505 WP_002436358.1 1575050..1575922(-) (dprA) [Staphylococcus capitis subsp. urealyticus strain Sc1516939]
GTGATTCAACACACTTTATTGAAGCTCTATTGGGCTAATTTCGCCACAACGCAAGTTCATCAATTTATTAAAGAATATCC
AGAAGTTATTTCAGAAAATGCACTAATTCAAAATGAGATGATTGAGGATTGGGCTAAAAGACAAACCTCATCCACAGTCA
GGAGAAAATTGAGCTTATTTAAATCACTTAATACAGAAGTTATATTTCAAGAAATGACTAAAATGAACCTCAAATATTTA
ACTTACTTTGACAAACATTATCCTCAATTACTTAAAGAAATTTATGATTTCCCATATGTAATTTTTTATAAAGGAAATAA
ACAACTATTTAATTGTCCTCATACTTTAGCTGTTATAGGCTCAAGAAAGTCAACTTTATATACAACTCAAGCTTTGGAAT
ACCTTTTCCCATCATTTAAATCACTGAAAATGACGATTATTTCCGGATTAGCATATGGTGCAGATAGTATAGCTCACCAA
GTCGCACTAAAAAATAAACTTCCAACAATAGGTGTTCTTGGCTTCGGCCATTCATATCATTATCCTAAATCATCTTTAAA
GACAAGAGAGAATATCGAACGAAAAGGACTAGTTATAAGTGAGTATCCACCTCATTCTCCCATAACCAGATATAAATTTC
CTGAAAGAAATAGATTGATTAGTGGACTCGCTCGGGGTCTATTAATTACAGAAGCAGAGAAAATAAGCGGTAGTCAAATA
ACAGTAGACTGCGCTTTAGAACAAAACCGGAATGTATATGTTTTACCAGGATCAATGTTTAATCCTATGACCAAAAGTAA
TTTACTTAGACTTCAAGAGGGGGCACAAGTCGTTTTAGATGAAAGTAGTATTCTTTCAGACTACATTTTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

59.028

99.31

0.586
  dprA Staphylococcus aureus MW2

59.028

99.31

0.586