Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   V5G20_RS12675 Genome accession   NZ_CP144922
Coordinates   2696100..2697158 (+) Length   352 a.a.
NCBI ID   WP_338463438.1    Uniprot ID   -
Organism   Brevibacillus borstelensis strain CP19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2691100..2702158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G20_RS12655 (V5G20_12655) rimO 2691128..2692474 (+) 1347 WP_003385786.1 30S ribosomal protein S12 methylthiotransferase RimO -
  V5G20_RS12660 (V5G20_12660) pgsA 2692475..2693050 (+) 576 WP_003385785.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V5G20_RS12665 (V5G20_12665) cinA 2693104..2694354 (+) 1251 WP_311068399.1 competence/damage-inducible protein A Machinery gene
  V5G20_RS12670 (V5G20_12670) - 2694351..2695937 (+) 1587 WP_003385783.1 DEAD/DEAH box helicase -
  V5G20_RS12675 (V5G20_12675) recA 2696100..2697158 (+) 1059 WP_338463438.1 recombinase RecA Machinery gene
  V5G20_RS12680 (V5G20_12680) - 2697224..2697865 (+) 642 WP_003385781.1 RecX family transcriptional regulator -
  V5G20_RS12685 (V5G20_12685) rny 2698142..2699698 (+) 1557 WP_031932891.1 ribonuclease Y -
  V5G20_RS12690 (V5G20_12690) - 2699950..2700744 (+) 795 WP_024983816.1 TIGR00282 family metallophosphoesterase -
  V5G20_RS12695 (V5G20_12695) spoVS 2700862..2701122 (+) 261 WP_003385776.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37732.09 Da        Isoelectric Point: 4.8876

>NTDB_id=935299 V5G20_RS12675 WP_338463438.1 2696100..2697158(+) (recA) [Brevibacillus borstelensis strain CP19]
MSDRRAALESALRQIEKQFGKGSIMKLGDMANVQVSTVSTGALAIDIALGVGGFPRGRIIEIYGPESSGKTTVALHAIAE
VQRQGGQAAFIDAEHALDPVYAAKLGVNIEELLLSQPDTGEQALEISEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRKAESIKVGNDVIGSKT
KVKVVKNKVAPPFKTAEVDIMYGEGISKEGSILDIGAEIDVVQKSGAWYSFNDERLGQGRENAKIYLKENPAIAAQIEAK
VREYYSLNPGSIPATEPVVDPEQDEEPMFDLE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=935299 V5G20_RS12675 WP_338463438.1 2696100..2697158(+) (recA) [Brevibacillus borstelensis strain CP19]
TTGTCAGACCGCCGCGCCGCTTTAGAAAGTGCATTGCGTCAAATAGAAAAACAATTTGGTAAGGGTTCCATCATGAAGCT
GGGGGATATGGCGAACGTTCAAGTTTCCACCGTATCCACTGGCGCTCTAGCCATTGATATTGCTCTCGGTGTGGGAGGAT
TCCCGCGTGGCCGAATTATTGAAATTTATGGACCGGAATCTTCCGGTAAAACGACTGTCGCCCTTCATGCGATTGCAGAA
GTACAGCGTCAGGGAGGACAGGCAGCATTTATCGATGCGGAGCACGCACTCGATCCTGTTTACGCCGCCAAGCTGGGCGT
CAACATCGAGGAACTGCTGCTGTCCCAGCCGGATACTGGCGAGCAGGCTCTGGAAATCTCGGAAGCGCTGGTTCGTTCAG
GCGCGGTAGACATCATTGTCGTCGACTCCGTTGCGGCACTCGTACCGAAGGCTGAGATTGAAGGGGAGATGGGCGATTCG
CACGTCGGTTTGCAGGCCCGTCTGATGTCGCAAGCTCTGCGCAAGCTCTCCGGTGCCATCAACAAGTCCAAGACGATTGC
GATCTTTATTAACCAGCTGCGTGAAAAAGTAGGGGTTATGTTCGGAAACCCTGAAACAACGCCTGGTGGACGAGCTCTGA
AGTTCTATGCCAGCGTTCGCCTGGATGTCCGCAAGGCTGAATCGATCAAAGTAGGCAATGACGTGATCGGCTCCAAAACC
AAGGTGAAGGTCGTCAAGAACAAGGTAGCGCCGCCGTTTAAGACTGCGGAAGTGGACATTATGTACGGCGAAGGGATTTC
CAAGGAAGGAAGCATTCTTGATATCGGTGCCGAAATCGACGTGGTGCAAAAGAGCGGAGCATGGTATTCTTTCAATGATG
AGCGTTTGGGCCAAGGCCGTGAAAATGCCAAGATCTACTTAAAGGAAAATCCGGCAATCGCAGCCCAAATCGAGGCCAAG
GTACGTGAATACTACAGCCTGAACCCAGGTTCCATCCCGGCAACCGAACCGGTCGTCGATCCTGAGCAAGATGAGGAACC
GATGTTCGATCTGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.012

93.182

0.764
  recA Latilactobacillus sakei subsp. sakei 23K

69.298

97.159

0.673
  recA Streptococcus mitis NCTC 12261

66.006

100

0.662
  recA Streptococcus pyogenes NZ131

65.254

100

0.656
  recA Streptococcus pneumoniae TIGR4

68.769

94.602

0.651
  recA Streptococcus pneumoniae Rx1

68.769

94.602

0.651
  recA Streptococcus mitis SK321

68.769

94.602

0.651
  recA Streptococcus pneumoniae D39

68.769

94.602

0.651
  recA Streptococcus pneumoniae R6

68.769

94.602

0.651
  recA Lactococcus lactis subsp. cremoris KW2

68.182

93.75

0.639
  recA Streptococcus mutans UA159

67.477

93.466

0.631
  recA Neisseria gonorrhoeae MS11

63.295

98.295

0.622
  recA Neisseria gonorrhoeae MS11

63.295

98.295

0.622
  recA Neisseria gonorrhoeae strain FA1090

63.295

98.295

0.622
  recA Ralstonia pseudosolanacearum GMI1000

66.769

92.33

0.616
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.055

92.898

0.614
  recA Vibrio cholerae strain A1552

66.055

92.898

0.614
  recA Acinetobacter baumannii D1279779

61.429

99.432

0.611
  recA Glaesserella parasuis strain SC1401

62.209

97.727

0.608
  recA Pseudomonas stutzeri DSM 10701

60.933

97.443

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

92.898

0.588
  recA Acinetobacter baylyi ADP1

63.889

92.045

0.588
  recA Helicobacter pylori 26695

60.526

97.159

0.588
  recA Helicobacter pylori strain NCTC11637

60.234

97.159

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.24

91.193

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

90.909

0.568