Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V5G20_RS12665 Genome accession   NZ_CP144922
Coordinates   2693104..2694354 (+) Length   416 a.a.
NCBI ID   WP_311068399.1    Uniprot ID   -
Organism   Brevibacillus borstelensis strain CP19     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2688104..2699354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G20_RS12645 (V5G20_12645) - 2688538..2689446 (+) 909 WP_003385787.1 RodZ domain-containing protein -
  V5G20_RS12650 (V5G20_12650) - 2689567..2691012 (+) 1446 WP_024985259.1 IS1182 family transposase -
  V5G20_RS12655 (V5G20_12655) rimO 2691128..2692474 (+) 1347 WP_003385786.1 30S ribosomal protein S12 methylthiotransferase RimO -
  V5G20_RS12660 (V5G20_12660) pgsA 2692475..2693050 (+) 576 WP_003385785.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V5G20_RS12665 (V5G20_12665) cinA 2693104..2694354 (+) 1251 WP_311068399.1 competence/damage-inducible protein A Machinery gene
  V5G20_RS12670 (V5G20_12670) - 2694351..2695937 (+) 1587 WP_003385783.1 DEAD/DEAH box helicase -
  V5G20_RS12675 (V5G20_12675) recA 2696100..2697158 (+) 1059 WP_338463438.1 recombinase RecA Machinery gene
  V5G20_RS12680 (V5G20_12680) - 2697224..2697865 (+) 642 WP_003385781.1 RecX family transcriptional regulator -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45251.04 Da        Isoelectric Point: 5.9146

>NTDB_id=935298 V5G20_RS12665 WP_311068399.1 2693104..2694354(+) (cinA) [Brevibacillus borstelensis strain CP19]
MKAEIIAVGTELLLGQIANTNAQFLSQKLAEIGVGVYFHTVVGDNTERLMQVIKQASVRSDLIIFTGGLGPTQDDLTKET
VAAHIDAGLVTDPVALERIESFFHQRGIVMTENNRKQALVFDRGQVFPNDTGMAPGMAAEHNGRTFVLLPGPPSELYPMA
DRYVMPYLIGLLPEQQVFHSHVLRFYGIGESALEEQLLDLIESQENPTIAPYAKEFEVTLRITARAKTVAEAEKLIEPVE
REIYRRLGEFIYAKGETSLHEVLVEELKQNGKTIACAESCTGGKVASLVTSVPGSSTVMRGGIVCYTNDAKRELVDVPQA
VLDTDGAVSEQTARLLAENVRQKLRATCGISVTGVAGPDPSEGKPVGLVYIGVAIDGLPTVVKELRLAGRRHAIVGRAAK
FALFYALQRLKKGERI

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=935298 V5G20_RS12665 WP_311068399.1 2693104..2694354(+) (cinA) [Brevibacillus borstelensis strain CP19]
ATGAAAGCGGAGATTATTGCTGTTGGAACAGAGCTTTTACTGGGGCAGATCGCCAATACCAATGCGCAGTTTTTGTCGCA
AAAATTGGCGGAGATCGGCGTAGGAGTCTATTTCCATACGGTTGTGGGCGACAACACCGAGCGGCTGATGCAGGTCATCA
AGCAAGCTTCTGTCCGCTCCGACCTGATTATTTTTACCGGCGGTCTGGGCCCGACTCAGGACGATTTGACCAAGGAAACG
GTCGCGGCACATATTGACGCCGGACTTGTGACTGATCCTGTGGCGCTGGAACGCATTGAATCGTTTTTTCACCAGCGCGG
CATTGTCATGACAGAAAACAATCGCAAGCAGGCGCTCGTTTTTGACCGCGGGCAGGTGTTTCCGAACGACACGGGGATGG
CGCCGGGGATGGCAGCAGAGCACAATGGCCGTACATTTGTGCTTTTGCCGGGGCCGCCGAGCGAACTGTACCCGATGGCC
GATCGGTATGTCATGCCTTATTTGATCGGCTTGCTGCCGGAGCAGCAGGTGTTTCACTCCCATGTCCTGCGTTTTTACGG
GATTGGCGAATCCGCATTGGAAGAACAGCTGCTCGATCTGATTGAAAGCCAGGAGAATCCGACGATTGCCCCTTATGCCA
AAGAGTTTGAGGTTACACTGCGGATTACGGCACGGGCAAAAACGGTGGCCGAAGCAGAGAAGCTGATCGAGCCGGTCGAG
CGGGAGATTTACAGACGTTTGGGCGAATTTATCTATGCCAAAGGGGAAACCTCCCTCCACGAGGTCCTTGTAGAAGAGTT
GAAACAAAACGGGAAGACCATCGCATGCGCCGAGAGCTGCACAGGCGGCAAAGTCGCCTCGCTAGTTACCTCCGTTCCCG
GCAGTTCAACAGTCATGCGCGGGGGAATCGTATGCTATACGAACGATGCCAAGCGCGAGCTGGTCGATGTTCCCCAAGCT
GTACTCGACACTGACGGAGCGGTAAGTGAGCAAACAGCAAGGCTGCTTGCCGAAAACGTGCGTCAAAAACTGCGCGCGAC
CTGCGGCATTTCGGTAACCGGTGTTGCCGGTCCGGACCCTTCAGAGGGCAAACCCGTGGGACTTGTTTACATTGGAGTGG
CAATAGATGGACTGCCGACTGTTGTCAAAGAGCTCCGACTTGCCGGCAGAAGACACGCTATCGTGGGACGTGCTGCCAAA
TTTGCTTTATTCTACGCGCTTCAGCGACTAAAGAAAGGTGAACGTATATGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.365

98.798

0.498
  cinA Streptococcus pneumoniae TIGR4

48.086

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.847

100

0.481
  cinA Streptococcus pneumoniae R6

47.847

100

0.481
  cinA Streptococcus pneumoniae D39

47.608

100

0.478
  cinA Streptococcus mitis NCTC 12261

47.608

100

0.478
  cinA Streptococcus mitis SK321

47.368

100

0.476
  cinA Streptococcus mutans UA159

46.366

95.913

0.445
  cinA Streptococcus suis isolate S10

40.759

94.952

0.387