Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FTX54_RS09145 Genome accession   NZ_CP144914
Coordinates   2008082..2009128 (-) Length   348 a.a.
NCBI ID   WP_147802296.1    Uniprot ID   A0A5C7FCW3
Organism   Alkalicoccus halolimnae strain BZ-SZ-XJ29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2003082..2014128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FTX54_RS09125 (FTX54_009120) tdh 2003429..2004469 (-) 1041 WP_147802292.1 L-threonine 3-dehydrogenase -
  FTX54_RS09130 (FTX54_009125) - 2004842..2005102 (-) 261 WP_147802293.1 stage V sporulation protein S -
  FTX54_RS09135 (FTX54_009130) - 2005243..2006037 (-) 795 WP_147802294.1 TIGR00282 family metallophosphoesterase -
  FTX54_RS09140 (FTX54_009135) rny 2006131..2007696 (-) 1566 WP_147802295.1 ribonuclease Y -
  FTX54_RS09145 (FTX54_009140) recA 2008082..2009128 (-) 1047 WP_147802296.1 recombinase RecA Machinery gene
  FTX54_RS09150 (FTX54_009145) - 2009271..2010863 (-) 1593 WP_147802297.1 DEAD/DEAH box helicase -
  FTX54_RS09155 (FTX54_009150) cinA 2010878..2012116 (-) 1239 WP_147802298.1 competence/damage-inducible protein A Machinery gene
  FTX54_RS09160 (FTX54_009155) pgsA 2012130..2012708 (-) 579 WP_147802299.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FTX54_RS09165 (FTX54_009160) - 2012928..2013767 (-) 840 WP_187254429.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37891.05 Da        Isoelectric Point: 4.8647

>NTDB_id=935113 FTX54_RS09145 WP_147802296.1 2008082..2009128(-) (recA) [Alkalicoccus halolimnae strain BZ-SZ-XJ29]
MSDRKQALDMALKQIEKQFGKGSIMKLGEQTDRRVSTVSSGTLALDIALGVGGYPRGRVVEIYGPESSGKTTVALHAIAA
VQRNGGQAAFIDAEHALDPEYAQNLGVDIDELLLSQPDTGEQALEIAEALVRSGAVDMIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAVSKSNTIAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKQGNEMIGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISREGSLIDMASELDIIQKSGAWYAYEGERMGQGRENAKTFLKENTTTMDEIERK
VREHYGLLEPQEVPAPKEEETDEELDLK

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=935113 FTX54_RS09145 WP_147802296.1 2008082..2009128(-) (recA) [Alkalicoccus halolimnae strain BZ-SZ-XJ29]
GTGTCAGATCGAAAGCAGGCGCTGGACATGGCGTTAAAGCAGATTGAAAAGCAGTTCGGCAAAGGATCCATCATGAAACT
TGGAGAACAGACGGACCGTCGTGTTTCCACTGTTTCCAGTGGAACATTGGCATTGGATATAGCACTTGGAGTCGGAGGAT
ATCCTCGCGGAAGAGTCGTTGAAATTTACGGTCCTGAATCTTCCGGTAAAACTACGGTAGCTCTTCATGCAATTGCAGCA
GTTCAGCGAAACGGAGGACAGGCTGCTTTTATAGATGCGGAGCACGCACTGGATCCTGAATATGCCCAGAACCTGGGAGT
AGATATTGACGAGCTTCTTTTATCGCAGCCGGATACCGGAGAGCAGGCACTTGAAATTGCAGAAGCTTTAGTCCGAAGCG
GTGCTGTAGATATGATTGTTGTTGATTCGGTTGCAGCTCTCGTACCTAAGGCGGAAATTGAAGGAGAAATGGGAGACAGC
CACGTTGGTCTTCAGGCAAGACTGATGTCCCAGGCACTGCGTAAATTGTCCGGCGCCGTTTCAAAGTCGAATACTATAGC
GGTTTTCATTAACCAGATCCGTGAAAAAGTCGGCGTCATGTTCGGTAATCCGGAAACTACACCGGGAGGCCGGGCACTGA
AATTCTATTCTTCAGTCCGACTGGAAGTACGAAGAGCGGAAGCATTGAAGCAGGGGAACGAAATGATTGGAAACAAAACA
AAAATTAAAGTAGTGAAAAACAAAGTAGCTCCCCCATTCCGCACAGCGGAAGTTGATATCATGTATGGAGAAGGTATATC
GCGAGAAGGTTCTTTAATTGATATGGCTTCTGAATTAGATATTATTCAAAAAAGCGGAGCCTGGTATGCCTACGAAGGTG
AACGTATGGGCCAGGGGCGTGAAAATGCCAAAACGTTTTTGAAAGAAAATACAACGACGATGGATGAGATTGAACGCAAA
GTCCGTGAACATTACGGGCTGCTCGAACCACAGGAAGTCCCTGCACCTAAAGAAGAAGAAACAGATGAGGAGCTTGATTT
AAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C7FCW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.404

93.966

0.793
  recA Latilactobacillus sakei subsp. sakei 23K

72.464

99.138

0.718
  recA Streptococcus mutans UA159

68.091

100

0.687
  recA Streptococcus pyogenes NZ131

67.705

100

0.687
  recA Streptococcus pneumoniae Rx1

64.444

100

0.667
  recA Streptococcus pneumoniae D39

64.444

100

0.667
  recA Streptococcus pneumoniae R6

64.444

100

0.667
  recA Streptococcus pneumoniae TIGR4

64.444

100

0.667
  recA Lactococcus lactis subsp. cremoris KW2

68.155

96.552

0.658
  recA Streptococcus mitis NCTC 12261

66.181

98.563

0.652
  recA Streptococcus mitis SK321

65.698

98.851

0.649
  recA Ralstonia pseudosolanacearum GMI1000

62.784

100

0.635
  recA Neisseria gonorrhoeae strain FA1090

64.14

98.563

0.632
  recA Neisseria gonorrhoeae MS11

64.14

98.563

0.632
  recA Neisseria gonorrhoeae MS11

64.14

98.563

0.632
  recA Acinetobacter baylyi ADP1

62.644

100

0.626
  recA Glaesserella parasuis strain SC1401

62.029

99.138

0.615
  recA Vibrio cholerae strain A1552

64.048

95.115

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.048

95.115

0.609
  recA Helicobacter pylori strain NCTC11637

61.128

96.839

0.592
  recA Acinetobacter baumannii D1279779

63.665

92.529

0.589
  recA Helicobacter pylori 26695

60.831

96.839

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.883

93.678

0.589
  recA Pseudomonas stutzeri DSM 10701

63.438

91.954

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.245

93.966

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

92.816

0.557