Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FTX54_RS09155 Genome accession   NZ_CP144914
Coordinates   2010878..2012116 (-) Length   412 a.a.
NCBI ID   WP_147802298.1    Uniprot ID   A0A5C7FCV8
Organism   Alkalicoccus halolimnae strain BZ-SZ-XJ29     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2005878..2017116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FTX54_RS09140 (FTX54_009135) rny 2006131..2007696 (-) 1566 WP_147802295.1 ribonuclease Y -
  FTX54_RS09145 (FTX54_009140) recA 2008082..2009128 (-) 1047 WP_147802296.1 recombinase RecA Machinery gene
  FTX54_RS09150 (FTX54_009145) - 2009271..2010863 (-) 1593 WP_147802297.1 DEAD/DEAH box helicase -
  FTX54_RS09155 (FTX54_009150) cinA 2010878..2012116 (-) 1239 WP_147802298.1 competence/damage-inducible protein A Machinery gene
  FTX54_RS09160 (FTX54_009155) pgsA 2012130..2012708 (-) 579 WP_147802299.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FTX54_RS09165 (FTX54_009160) - 2012928..2013767 (-) 840 WP_187254429.1 helix-turn-helix domain-containing protein -
  FTX54_RS09170 (FTX54_009165) - 2013794..2014558 (-) 765 WP_147802301.1 DUF3388 domain-containing protein -
  FTX54_RS09175 (FTX54_009170) - 2014686..2015405 (-) 720 WP_147802302.1 SDR family oxidoreductase -
  FTX54_RS09180 (FTX54_009175) - 2015402..2016700 (-) 1299 WP_147802303.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44715.62 Da        Isoelectric Point: 4.5372

>NTDB_id=935114 FTX54_RS09155 WP_147802298.1 2010878..2012116(-) (cinA) [Alkalicoccus halolimnae strain BZ-SZ-XJ29]
MNAEIIGVGSELILGQIDNSNASFLSKELSQAGINVYYHQAVGDNPGRLKNAFTTAKSRADVIILTGGLGPTKDDLTRET
VSEITGRKLVYEQAAKDQILSFFKGREQTMTDNNLQQALIPEGAEVFPNDEGLACGSVLDDNGTLVMMLPGPPRELKVMF
KTYGIPYLTNQISERQQIQSTVLRFYEIGESQLVDKIDDLLESQTNPTIAPLASDGEVSLRLTVKGPSDSENDTLLHDLK
EKILDRVGEYCYGEGEEELEKIVADILREKKIGVSSAESLTGGAFADTMTKFGGASMIFPGGVVCYSNEAKQEAVGVDKA
ILEEHGAVSEACAIAMAEGCRKLFRSDYGVSFTGAAGPDPMEGYQPGEMFIGIAGPNETVGHFVKIKGSRSRIRTYAVKQ
ALYLLFQELRNK

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=935114 FTX54_RS09155 WP_147802298.1 2010878..2012116(-) (cinA) [Alkalicoccus halolimnae strain BZ-SZ-XJ29]
ATGAATGCAGAAATTATTGGTGTAGGATCTGAACTGATCCTTGGTCAGATTGATAATTCAAATGCTTCTTTTTTATCCAA
GGAACTGTCTCAAGCAGGGATCAATGTTTACTATCATCAGGCTGTAGGAGACAATCCCGGACGATTGAAAAATGCCTTTA
CTACAGCCAAATCGCGGGCGGATGTTATTATCCTGACGGGTGGCCTCGGCCCGACAAAAGATGACCTCACCCGTGAAACT
GTCTCTGAAATCACGGGCAGAAAGCTGGTATATGAACAAGCCGCCAAAGATCAGATCCTTTCCTTTTTTAAAGGCCGGGA
ACAGACAATGACGGATAATAATTTACAGCAGGCTCTTATTCCGGAGGGGGCGGAAGTTTTTCCCAATGACGAAGGACTTG
CATGTGGCTCTGTTTTAGATGATAATGGAACTCTTGTTATGATGCTTCCTGGTCCTCCGCGCGAATTAAAAGTAATGTTT
AAAACGTATGGAATTCCTTATCTCACGAATCAAATCAGCGAAAGACAGCAGATACAGTCAACTGTGCTTCGATTTTATGA
GATTGGTGAATCACAGCTGGTCGATAAGATCGACGATTTATTGGAAAGTCAGACTAACCCAACGATAGCCCCTCTTGCGT
CCGATGGAGAAGTTTCTCTGCGGTTAACTGTAAAAGGTCCTTCTGATTCTGAAAACGACACGCTGCTGCACGATTTAAAA
GAAAAGATTTTAGATCGAGTTGGTGAGTACTGTTATGGAGAAGGTGAAGAAGAACTTGAAAAAATTGTTGCAGATATTTT
AAGAGAGAAAAAAATAGGAGTTTCTTCAGCTGAAAGCTTGACTGGCGGGGCTTTTGCTGATACTATGACGAAATTCGGCG
GAGCTTCTATGATTTTCCCCGGCGGCGTCGTGTGTTATAGTAATGAAGCGAAGCAGGAAGCTGTTGGAGTAGATAAAGCT
ATTCTGGAGGAACACGGTGCTGTGAGCGAGGCTTGTGCCATAGCGATGGCAGAAGGCTGCCGTAAACTATTCCGGTCAGA
TTACGGCGTAAGTTTTACCGGTGCTGCAGGACCCGATCCGATGGAAGGTTATCAACCGGGAGAGATGTTTATAGGAATTG
CCGGTCCTAATGAGACCGTGGGCCATTTTGTTAAGATTAAGGGAAGCCGCAGCAGGATCCGCACGTACGCGGTGAAACAA
GCACTTTACTTGCTGTTTCAAGAGTTACGAAATAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C7FCV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

48.78

99.515

0.485
  cinA Streptococcus mitis SK321

44.391

100

0.451
  cinA Streptococcus pneumoniae TIGR4

44.153

100

0.449
  cinA Streptococcus mitis NCTC 12261

44.153

100

0.449
  cinA Streptococcus pneumoniae Rx1

43.914

100

0.447
  cinA Streptococcus pneumoniae R6

43.914

100

0.447
  cinA Streptococcus pneumoniae D39

43.675

100

0.444
  cinA Streptococcus mutans UA159

43.961

100

0.442
  cinA Streptococcus suis isolate S10

36.946

98.544

0.364