Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MWM02_RS12855 Genome accession   NZ_AP025627
Coordinates   2556197..2557249 (-) Length   350 a.a.
NCBI ID   WP_064551284.1    Uniprot ID   A0A1B7KU55
Organism   Parageobacillus sp. KH3-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2551197..2562249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM02_RS12835 (PspKH34_25340) - 2551884..2552807 (-) 924 WP_244402186.1 dipeptidase -
  MWM02_RS12840 (PspKH34_25350) spoVS 2552896..2553156 (-) 261 WP_003251598.1 stage V sporulation protein SpoVS -
  MWM02_RS12845 (PspKH34_25360) - 2553282..2554076 (-) 795 WP_064550966.1 TIGR00282 family metallophosphoesterase -
  MWM02_RS12850 (PspKH34_25370) rny 2554160..2555725 (-) 1566 WP_064550967.1 ribonuclease Y -
  MWM02_RS12855 (PspKH34_25380) recA 2556197..2557249 (-) 1053 WP_064551284.1 recombinase RecA Machinery gene
  MWM02_RS12860 (PspKH34_25390) cinA 2557415..2558662 (-) 1248 WP_244402187.1 competence/damage-inducible protein A Machinery gene
  MWM02_RS12865 (PspKH34_25400) pgsA 2558776..2559354 (-) 579 WP_064550969.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MWM02_RS12870 (PspKH34_25410) - 2559409..2560284 (-) 876 WP_244402188.1 helix-turn-helix domain-containing protein -
  MWM02_RS12875 (PspKH34_25420) - 2560315..2561106 (-) 792 WP_064550971.1 DUF3388 domain-containing protein -
  MWM02_RS12880 (PspKH34_25430) - 2561246..2561494 (-) 249 WP_064550972.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38044.13 Da        Isoelectric Point: 5.2026

>NTDB_id=93295 MWM02_RS12855 WP_064551284.1 2556197..2557249(-) (recA) [Parageobacillus sp. KH3-4]
MNQDRQAALEQALKQIERQFGKGSIMRLGEQTDRKISTVSSGSLALDIALGVGGYPRGRIIEIYGPESSGKTTVALHAIA
EVQKQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGD
AHVGLQARLMSQALRKLSGAINKSKAIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNK
TKIKVVKNKVAPPFKTADVDIMYGEGISREGEIIDMASELDIVQKSGSWYSYKDERLGQGRENAKQFLKENPHIAEEIAQ
EIRKHYGIESPSSSSDTNGSQQEEFGLLEE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=93295 MWM02_RS12855 WP_064551284.1 2556197..2557249(-) (recA) [Parageobacillus sp. KH3-4]
GTGAATCAAGATCGTCAAGCTGCCTTGGAACAGGCGTTAAAACAGATCGAAAGGCAATTTGGAAAAGGCTCAATCATGAG
ACTTGGAGAGCAAACAGATCGTAAAATATCCACTGTGTCAAGCGGATCGCTTGCGCTCGATATCGCTTTAGGTGTTGGCG
GATATCCGCGTGGCCGCATTATTGAAATATATGGGCCTGAATCTTCCGGGAAAACAACGGTGGCGCTCCACGCGATCGCC
GAAGTGCAGAAACAAGGAGGGCAAGCCGCGTTTATCGACGCAGAGCACGCGCTTGATCCGGTGTATGCGCAAAAATTAGG
CGTGAACATTGATGAATTGCTACTTTCCCAGCCGGATACAGGAGAGCAGGCGCTGGAAATTGCCGAGGCGCTGGTAAGAA
GCGGTGCGGTCGATATTATCGTTATTGACTCTGTCGCGGCGCTCGTGCCAAAAGCGGAAATTGAAGGGGAAATGGGCGAC
GCTCACGTTGGCTTGCAGGCTCGCCTCATGTCGCAAGCGTTGCGCAAATTATCAGGAGCGATTAATAAATCAAAGGCGAT
CGCGATTTTCATCAACCAAATTCGCGAAAAAGTCGGTGTGATGTTCGGAAATCCAGAGACAACTCCAGGCGGTCGCGCGT
TAAAATTTTATGCTTCAGTCCGTCTAGAAGTGCGCCGGGCCGAACAAATCAAGCAAGGCAACGATATGGTTGGAAATAAA
ACGAAAATTAAAGTCGTGAAAAATAAAGTTGCCCCTCCATTTAAAACGGCTGACGTAGATATTATGTACGGAGAGGGAAT
TTCCCGCGAAGGCGAAATTATTGATATGGCGTCAGAGTTAGATATCGTGCAAAAAAGCGGCTCCTGGTATTCGTATAAAG
ACGAGCGCTTGGGTCAAGGCCGCGAAAATGCAAAACAGTTTTTAAAGGAGAATCCGCATATCGCTGAAGAAATTGCCCAA
GAAATTCGCAAACATTACGGGATTGAGTCTCCTTCAAGTTCTAGTGATACAAACGGGTCACAACAGGAGGAATTCGGACT
TTTGGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B7KU55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.156

93.429

0.814
  recA Latilactobacillus sakei subsp. sakei 23K

73.775

99.143

0.731
  recA Streptococcus pneumoniae Rx1

71.429

94

0.671
  recA Streptococcus pneumoniae D39

71.429

94

0.671
  recA Streptococcus pneumoniae R6

71.429

94

0.671
  recA Streptococcus mitis NCTC 12261

71.429

94

0.671
  recA Streptococcus pneumoniae TIGR4

71.429

94

0.671
  recA Streptococcus mitis SK321

71.125

94

0.669
  recA Streptococcus mutans UA159

66.957

98.571

0.66
  recA Streptococcus pyogenes NZ131

69.817

93.714

0.654
  recA Lactococcus lactis subsp. cremoris KW2

68.693

94

0.646
  recA Glaesserella parasuis strain SC1401

62.178

99.714

0.62
  recA Acinetobacter baumannii D1279779

62.791

98.286

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.422

96.857

0.614
  recA Ralstonia pseudosolanacearum GMI1000

68.371

89.429

0.611
  recA Neisseria gonorrhoeae MS11

61.494

99.429

0.611
  recA Neisseria gonorrhoeae MS11

61.494

99.429

0.611
  recA Neisseria gonorrhoeae strain FA1090

61.494

99.429

0.611
  recA Acinetobacter baylyi ADP1

61.032

99.714

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.741

92.571

0.609
  recA Vibrio cholerae strain A1552

65.741

92.571

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.72

93.714

0.597
  recA Pseudomonas stutzeri DSM 10701

62.388

95.714

0.597
  recA Helicobacter pylori strain NCTC11637

62.805

93.714

0.589
  recA Helicobacter pylori 26695

62.805

93.714

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.776

90.571

0.569

Multiple sequence alignment