Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VX159_RS00485 Genome accession   NZ_CP144212
Coordinates   91394..92422 (+) Length   342 a.a.
NCBI ID   WP_371324039.1    Uniprot ID   -
Organism   Dechloromonas sp. ZY10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 86394..97422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VX159_RS00460 (VX159_00460) - 86809..87447 (-) 639 WP_371324034.1 alpha/beta hydrolase -
  VX159_RS00465 (VX159_00465) - 87456..87764 (-) 309 WP_371324035.1 ferredoxin -
  VX159_RS00470 (VX159_00470) - 87825..88877 (-) 1053 WP_371324036.1 VanZ family protein -
  VX159_RS00475 (VX159_00475) - 88884..90371 (-) 1488 WP_371324037.1 sodium:solute symporter family protein -
  VX159_RS00480 (VX159_00480) - 90454..91122 (-) 669 WP_371324038.1 RluA family pseudouridine synthase -
  VX159_RS00485 (VX159_00485) recA 91394..92422 (+) 1029 WP_371324039.1 recombinase RecA Machinery gene
  VX159_RS00490 (VX159_00490) recX 92415..92849 (+) 435 WP_371324040.1 recombination regulator RecX -
  VX159_RS00495 (VX159_00495) lptB 92846..93580 (+) 735 WP_371324041.1 LPS export ABC transporter ATP-binding protein -
  VX159_RS00500 (VX159_00500) rpoN/rpoN1 93611..95074 (+) 1464 WP_371324042.1 RNA polymerase factor sigma-54 Machinery gene
  VX159_RS00505 (VX159_00505) hpf 95089..95412 (+) 324 WP_371324043.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  VX159_RS00510 (VX159_00510) ptsN 95467..95913 (+) 447 WP_371324044.1 PTS IIA-like nitrogen regulatory protein PtsN -
  VX159_RS00515 (VX159_00515) hprK 95921..96856 (+) 936 WP_371324045.1 HPr(Ser) kinase/phosphatase -
  VX159_RS00520 (VX159_00520) - 96915..97181 (+) 267 WP_371324046.1 PsiF family protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36659.27 Da        Isoelectric Point: 5.8211

>NTDB_id=932604 VX159_RS00485 WP_371324039.1 91394..92422(+) (recA) [Dechloromonas sp. ZY10]
MDDNKAKALAAALQQIEKQFGKGSIMKMGDAEIDEGIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLCLQVV
AEMQKLGGVAAFIDAEHALDPQYAQKLGVNVGDLLISQPDTGEQALEIADMLVRSGSVDIIIVDSVAALTPRAEIEGEMG
DQMVGLHARLMSQALRKLTANIKKTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRIGGIKKGDEVIGN
ETKVKIVKNKVSPPFREAIFDILYGEGISREGEIIEMGVAHKLIDKSGAWYSYKGEKIGQGKDNAREFLRAHPEIAQEVE
AQIREAASVTVIKPSKSAPADA

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=932604 VX159_RS00485 WP_371324039.1 91394..92422(+) (recA) [Dechloromonas sp. ZY10]
ATGGACGACAACAAGGCAAAAGCGCTCGCCGCGGCGCTGCAGCAAATCGAGAAGCAGTTTGGCAAGGGCTCCATCATGAA
GATGGGCGATGCCGAAATCGACGAGGGTATCCAGGTCGTGTCGACCGGTTCGCTCGGCCTTGATATTGCGCTTGGCGTCG
GTGGTTTGCCGCGTGGCCGGGTGGTCGAGATTTACGGCCCGGAATCCTCGGGCAAAACCACGCTGTGTCTGCAAGTGGTT
GCCGAAATGCAGAAGCTGGGTGGCGTGGCGGCGTTCATCGACGCCGAACACGCGCTGGATCCGCAGTATGCGCAAAAGCT
CGGTGTTAATGTTGGTGACCTGCTGATTTCGCAGCCTGATACTGGCGAACAGGCGCTGGAAATTGCCGACATGCTGGTGC
GTTCGGGTTCGGTAGATATCATCATCGTTGACTCGGTTGCTGCGCTTACGCCGCGCGCCGAAATCGAAGGCGAGATGGGC
GACCAGATGGTCGGCCTGCACGCCCGCCTGATGTCGCAGGCACTGCGCAAACTGACCGCCAACATCAAGAAGACCAACAC
CTTGGTCATCTTCATCAACCAGATCCGGATGAAGATCGGGGTCATGTTCGGTTCGCCGGAAACCACCACCGGCGGCAACG
CACTCAAGTTCTATGCCTCGGTACGGATGGACATCCGCCGCATCGGCGGGATCAAGAAGGGCGACGAAGTGATTGGCAAC
GAAACCAAGGTCAAGATCGTCAAGAACAAGGTGTCGCCACCGTTCCGCGAAGCCATTTTCGACATCCTCTACGGCGAGGG
GATTTCCCGCGAGGGTGAAATCATCGAAATGGGTGTCGCCCACAAGCTGATCGACAAGTCCGGTGCCTGGTATTCGTACA
AGGGTGAAAAGATTGGCCAGGGCAAGGACAACGCCCGCGAATTCCTGCGCGCCCATCCGGAAATCGCTCAGGAAGTCGAG
GCGCAGATTCGCGAAGCGGCCAGCGTCACCGTGATCAAACCGAGCAAGTCGGCACCGGCCGATGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.905

92.105

0.754
  recA Pseudomonas stutzeri DSM 10701

73.636

96.491

0.711
  recA Neisseria gonorrhoeae MS11

74.074

94.737

0.702
  recA Neisseria gonorrhoeae MS11

74.074

94.737

0.702
  recA Neisseria gonorrhoeae strain FA1090

74.074

94.737

0.702
  recA Glaesserella parasuis strain SC1401

69.096

100

0.693
  recA Acinetobacter baylyi ADP1

70.769

95.029

0.673
  recA Acinetobacter baumannii D1279779

68.182

96.491

0.658
  recA Vibrio cholerae strain A1552

68.615

95.029

0.652
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.615

95.029

0.652
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.957

96.199

0.634
  recA Bacillus subtilis subsp. subtilis str. 168

65.231

95.029

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.242

96.491

0.62
  recA Latilactobacillus sakei subsp. sakei 23K

61.721

98.538

0.608
  recA Helicobacter pylori 26695

62.997

95.614

0.602
  recA Helicobacter pylori strain NCTC11637

62.997

95.614

0.602
  recA Streptococcus pneumoniae Rx1

62.346

94.737

0.591
  recA Streptococcus pneumoniae D39

62.346

94.737

0.591
  recA Streptococcus pneumoniae R6

62.346

94.737

0.591
  recA Streptococcus pneumoniae TIGR4

62.346

94.737

0.591
  recA Streptococcus mitis NCTC 12261

61.728

94.737

0.585
  recA Streptococcus mitis SK321

61.42

94.737

0.582
  recA Streptococcus mutans UA159

61.043

95.322

0.582
  recA Streptococcus pyogenes NZ131

60.123

95.322

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

94.444

0.567
  recA Lactococcus lactis subsp. cremoris KW2

59.568

94.737

0.564