Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   VX159_RS00500 Genome accession   NZ_CP144212
Coordinates   93611..95074 (+) Length   487 a.a.
NCBI ID   WP_371324042.1    Uniprot ID   -
Organism   Dechloromonas sp. ZY10     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 88611..100074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VX159_RS00475 (VX159_00475) - 88884..90371 (-) 1488 WP_371324037.1 sodium:solute symporter family protein -
  VX159_RS00480 (VX159_00480) - 90454..91122 (-) 669 WP_371324038.1 RluA family pseudouridine synthase -
  VX159_RS00485 (VX159_00485) recA 91394..92422 (+) 1029 WP_371324039.1 recombinase RecA Machinery gene
  VX159_RS00490 (VX159_00490) recX 92415..92849 (+) 435 WP_371324040.1 recombination regulator RecX -
  VX159_RS00495 (VX159_00495) lptB 92846..93580 (+) 735 WP_371324041.1 LPS export ABC transporter ATP-binding protein -
  VX159_RS00500 (VX159_00500) rpoN/rpoN1 93611..95074 (+) 1464 WP_371324042.1 RNA polymerase factor sigma-54 Machinery gene
  VX159_RS00505 (VX159_00505) hpf 95089..95412 (+) 324 WP_371324043.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  VX159_RS00510 (VX159_00510) ptsN 95467..95913 (+) 447 WP_371324044.1 PTS IIA-like nitrogen regulatory protein PtsN -
  VX159_RS00515 (VX159_00515) hprK 95921..96856 (+) 936 WP_371324045.1 HPr(Ser) kinase/phosphatase -
  VX159_RS00520 (VX159_00520) - 96915..97181 (+) 267 WP_371324046.1 PsiF family protein -
  VX159_RS00525 (VX159_00525) - 97273..97725 (-) 453 WP_371324047.1 HIT family protein -

Sequence

Protein


Download         Length: 487 a.a.        Molecular weight: 54508.56 Da        Isoelectric Point: 4.9664

>NTDB_id=932605 VX159_RS00500 WP_371324042.1 93611..95074(+) (rpoN/rpoN1) [Dechloromonas sp. ZY10]
MKPALQLKLSQHLALTPQLQQSIKLLQLSTIEMQQEIERYLLENPLLERDDDVPESFASAQSFDSPYQQEASQSETASEP
AAQGDDRDSEPPITPADVDDDRWASDAGTYSGAGRDEDDDSDAQDIHAATTSLRDHLGWQLGMTQLSERDRSLVRFLIEA
LDDDGYLSTPLVELWETLPPEYEIELEELEIALKHIQNFDPTGIGARSPQECLALQLRALPVSREGELALRIVEQHLELL
AARDFAKLKRLTSSDDAALKAAHALIVSLNPRPGAHFAAHDARYITPDVIVKKLKGKWTAYINPDAYPRLRVNRLYAEIL
AQQRRGNGNLTGQLQEARWLIKNVQQRFDTILRVSQAIVERQKQFFEHGEVAMRPLVLREIADILDLHESTVSRVTSQKF
MATPRGIFELKYFFGSHVSTDTGGACSATAIRALIKQLIGAEDGKKPLSDSQISEILGQQGIVVARRTVAKYRESLNIPP
VNLRKTL

Nucleotide


Download         Length: 1464 bp        

>NTDB_id=932605 VX159_RS00500 WP_371324042.1 93611..95074(+) (rpoN/rpoN1) [Dechloromonas sp. ZY10]
ATGAAGCCCGCCCTCCAGCTCAAACTCTCCCAGCATCTGGCGCTGACGCCGCAACTGCAACAGTCGATCAAACTGCTGCA
GCTGTCGACCATCGAGATGCAACAGGAGATTGAGCGTTACCTGCTTGAGAACCCGCTGCTCGAGCGCGACGATGACGTGC
CGGAGTCCTTTGCCTCGGCCCAGTCCTTCGACAGCCCCTACCAGCAGGAGGCGAGCCAGTCTGAGACTGCTTCCGAACCG
GCTGCGCAGGGCGATGATCGCGATAGCGAGCCCCCGATCACTCCGGCCGATGTCGACGATGACCGCTGGGCCAGCGATGC
CGGTACCTATAGCGGTGCCGGGCGTGACGAGGACGACGACAGCGACGCCCAGGATATCCACGCGGCAACGACCAGCCTGC
GCGATCATCTCGGCTGGCAGTTGGGGATGACCCAGTTGTCGGAGCGCGACCGCTCGCTGGTCCGTTTCCTGATCGAGGCC
CTCGACGACGACGGCTATCTATCAACGCCGCTGGTCGAATTGTGGGAAACCCTGCCGCCGGAATACGAAATCGAGCTCGA
AGAACTCGAAATCGCGCTCAAGCACATCCAGAATTTTGACCCGACCGGGATTGGCGCCCGTTCGCCGCAGGAGTGCCTGG
CTTTGCAGTTGCGGGCTTTGCCCGTCAGCCGGGAGGGCGAGTTGGCACTGCGGATCGTCGAGCAGCATCTGGAACTGCTG
GCCGCCCGTGATTTTGCCAAGCTCAAGCGCCTGACTTCCTCCGACGATGCCGCCCTGAAGGCTGCGCACGCGCTGATCGT
CAGCCTGAATCCACGACCCGGTGCGCATTTTGCAGCGCACGATGCGCGCTACATTACGCCCGACGTGATCGTCAAAAAGC
TCAAGGGCAAGTGGACGGCTTACATCAACCCCGATGCCTATCCGCGCTTGCGCGTCAATCGTCTCTATGCCGAAATCCTG
GCCCAGCAGCGGCGTGGCAATGGCAACCTGACGGGCCAGTTGCAGGAAGCCCGCTGGCTGATCAAGAACGTGCAGCAGCG
TTTCGACACCATCCTGCGGGTGTCGCAGGCGATCGTCGAGCGCCAGAAGCAGTTCTTTGAACACGGCGAGGTCGCAATGC
GCCCGCTGGTTCTGCGCGAAATCGCCGATATTCTCGATTTGCACGAGTCGACCGTGTCACGCGTCACCAGCCAGAAGTTC
ATGGCCACCCCGCGCGGCATCTTCGAACTCAAATATTTCTTCGGCAGTCATGTGTCCACCGATACCGGTGGCGCTTGCTC
TGCAACTGCCATCCGGGCACTGATCAAGCAATTGATTGGGGCCGAGGATGGCAAAAAGCCCTTGTCGGATAGTCAAATAT
CCGAAATACTAGGCCAGCAGGGAATCGTTGTAGCCCGACGGACGGTAGCGAAGTACCGTGAGTCGCTCAACATCCCGCCG
GTCAATTTACGCAAGACCCTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(331-485)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(124-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

58.167

100

0.6