Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   V1500_RS10435 Genome accession   NZ_CP143547
Coordinates   2126475..2127518 (+) Length   347 a.a.
NCBI ID   WP_409305494.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-155     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2121475..2132518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1500_RS10410 (V1500_10410) - 2121977..2122234 (+) 258 WP_409305489.1 DUF3243 domain-containing protein -
  V1500_RS10415 (V1500_10415) - 2122543..2123334 (+) 792 WP_409305490.1 DUF3388 domain-containing protein -
  V1500_RS10420 (V1500_10420) - 2123343..2124245 (+) 903 WP_409305491.1 helix-turn-helix domain-containing protein -
  V1500_RS10425 (V1500_10425) pgsA 2124318..2124902 (+) 585 WP_409305492.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V1500_RS10430 (V1500_10430) cinA 2124920..2126164 (+) 1245 WP_409305493.1 competence/damage-inducible protein A Machinery gene
  V1500_RS10435 (V1500_10435) recA 2126475..2127518 (+) 1044 WP_409305494.1 recombinase RecA Machinery gene
  V1500_RS10440 (V1500_10440) rny 2127834..2129396 (+) 1563 WP_409305495.1 ribonuclease Y -
  V1500_RS10445 (V1500_10445) - 2129588..2130388 (+) 801 WP_409305496.1 TIGR00282 family metallophosphoesterase -
  V1500_RS10450 (V1500_10450) spoVS 2130534..2130794 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -
  V1500_RS10455 (V1500_10455) - 2130977..2131906 (+) 930 WP_409305497.1 dipeptidase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37832.86 Da        Isoelectric Point: 4.8388

>NTDB_id=929608 V1500_RS10435 WP_409305494.1 2126475..2127518(+) (recA) [Peribacillus sp. SCS-155]
MSDRQAALEMALKQIEKQFGKGSIMKLGEQSDRRVSTVPSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAE
VQAAGGQAAFIDVEHALDPSYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSNTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVVGNKT
KIKIVKNKVAPPFRTAEVDIMYGEGISREGEIIDMGSELDIVQKSGSWYSYNDDRLGQGRENAKLFLKENPALRLEISKK
IRDHYNLDSEHTAPEDTDDQEEFELLD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=929608 V1500_RS10435 WP_409305494.1 2126475..2127518(+) (recA) [Peribacillus sp. SCS-155]
GTGAGCGATCGTCAAGCGGCGTTAGAAATGGCATTAAAGCAAATAGAAAAACAATTTGGTAAAGGTTCAATTATGAAGCT
TGGGGAACAATCTGACCGAAGAGTTTCCACCGTGCCGAGCGGTTCCCTGGCACTGGATGTGGCACTTGGAGTAGGCGGAT
ATCCTCGAGGCAGGATTATCGAGATTTACGGCCCTGAAAGCTCAGGTAAAACAACCGTTTCATTGCATGCGATTGCAGAA
GTCCAGGCTGCTGGCGGACAAGCTGCATTCATAGATGTTGAGCATGCATTGGATCCCTCGTATGCACAAAAATTGGGAGT
GAATATTGATGAATTGCTTCTTTCCCAGCCAGATACAGGAGAACAGGCTCTGGAAATTGCCGAAGCTCTTGTTCGCAGTG
GAGCTATTGACATCATCGTCATCGACTCTGTTGCCGCGTTAGTGCCAAAAGCAGAAATTGAAGGTGAAATGGGAGATTCC
CATGTTGGTTTGCAGGCCCGTCTGATGTCCCAGGCACTTCGTAAGCTTTCAGGTGCGATTAATAAATCAAATACAATCGC
CATTTTCATCAACCAGATTCGTGAGAAAATTGGCGTCATGTTTGGAAACCCGGAAACAACTCCAGGAGGACGCGCATTAA
AATTCTATTCTTCAGTGCGTCTTGAGGTACGCCGTGCAGAACAATTAAAGCAGGGCAATGATGTGGTCGGAAACAAAACT
AAGATTAAAATCGTGAAGAACAAGGTAGCGCCTCCTTTCCGTACTGCAGAGGTAGATATCATGTATGGAGAAGGGATTTC
ACGCGAAGGTGAAATTATCGACATGGGATCTGAATTAGACATTGTTCAAAAGAGCGGTTCCTGGTATTCATATAATGATG
ACCGCCTTGGCCAAGGACGTGAAAATGCAAAGCTATTCCTGAAGGAGAACCCGGCTCTTCGTTTAGAAATCTCTAAAAAG
ATTCGAGACCATTACAATCTTGATAGCGAGCACACTGCCCCTGAAGATACAGACGATCAAGAAGAATTTGAACTGCTGGA
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.842

94.813

0.833
  recA Latilactobacillus sakei subsp. sakei 23K

71.765

97.983

0.703
  recA Streptococcus pyogenes NZ131

65.23

100

0.654
  recA Streptococcus pneumoniae Rx1

65.318

99.712

0.651
  recA Streptococcus pneumoniae D39

65.318

99.712

0.651
  recA Streptococcus pneumoniae R6

65.318

99.712

0.651
  recA Streptococcus pneumoniae TIGR4

65.318

99.712

0.651
  recA Streptococcus mitis SK321

65.598

98.847

0.648
  recA Streptococcus mitis NCTC 12261

65.598

98.847

0.648
  recA Streptococcus mutans UA159

64.826

99.135

0.643
  recA Lactococcus lactis subsp. cremoris KW2

65.373

96.542

0.631
  recA Ralstonia pseudosolanacearum GMI1000

68.69

90.202

0.62
  recA Helicobacter pylori 26695

62.391

98.847

0.617
  recA Helicobacter pylori strain NCTC11637

62.391

98.847

0.617
  recA Neisseria gonorrhoeae MS11

66.667

92.507

0.617
  recA Neisseria gonorrhoeae MS11

66.667

92.507

0.617
  recA Neisseria gonorrhoeae strain FA1090

66.667

92.507

0.617
  recA Acinetobacter baylyi ADP1

61.272

99.712

0.611
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.353

97.983

0.611
  recA Vibrio cholerae strain A1552

65.732

92.507

0.608
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.732

92.507

0.608
  recA Acinetobacter baumannii D1279779

60.756

99.135

0.602
  recA Glaesserella parasuis strain SC1401

59.827

99.712

0.597
  recA Pseudomonas stutzeri DSM 10701

61.818

95.101

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.236

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

92.219

0.576