Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V1500_RS10430 Genome accession   NZ_CP143547
Coordinates   2124920..2126164 (+) Length   414 a.a.
NCBI ID   WP_409305493.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-155     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2119920..2131164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1500_RS10405 (V1500_10405) ymfI 2121172..2121897 (+) 726 WP_409305488.1 elongation factor P 5-aminopentanone reductase -
  V1500_RS10410 (V1500_10410) - 2121977..2122234 (+) 258 WP_409305489.1 DUF3243 domain-containing protein -
  V1500_RS10415 (V1500_10415) - 2122543..2123334 (+) 792 WP_409305490.1 DUF3388 domain-containing protein -
  V1500_RS10420 (V1500_10420) - 2123343..2124245 (+) 903 WP_409305491.1 helix-turn-helix domain-containing protein -
  V1500_RS10425 (V1500_10425) pgsA 2124318..2124902 (+) 585 WP_409305492.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V1500_RS10430 (V1500_10430) cinA 2124920..2126164 (+) 1245 WP_409305493.1 competence/damage-inducible protein A Machinery gene
  V1500_RS10435 (V1500_10435) recA 2126475..2127518 (+) 1044 WP_409305494.1 recombinase RecA Machinery gene
  V1500_RS10440 (V1500_10440) rny 2127834..2129396 (+) 1563 WP_409305495.1 ribonuclease Y -
  V1500_RS10445 (V1500_10445) - 2129588..2130388 (+) 801 WP_409305496.1 TIGR00282 family metallophosphoesterase -
  V1500_RS10450 (V1500_10450) spoVS 2130534..2130794 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45583.22 Da        Isoelectric Point: 5.8929

>NTDB_id=929607 V1500_RS10430 WP_409305493.1 2124920..2126164(+) (cinA) [Peribacillus sp. SCS-155]
MDAEIIAVGSELLLGQIANTNAQYLSVQFAEMGINVFYHTVVGDNHKRLESALEIAESRSNLIVFTGGLGPTKDDLTKET
IARHLGKKLVYDEPALHSIEEYFRKTGREMTENNRKQALIIDGSEVLPNDHGMAPGMVIKEKGITYMLLPGPPKEMQPMF
TAYGFENLMKKMDKHERIESKVLRFFGIGESLLETKIEDLLDKQTNPTIAPLAADGEVTLRISAKHSSREKCEEMISESE
KEILRRVGEFYYGADQTSLIKELVKELTVRKLSISAAESLTGGMFQEQLTSIPGAGKVFKGGIVSYTNEVKAEVLGVSED
TIKKFGVVSEECALEMAQNVRKQLGADVGISFTGVAGPDEQEGKPVGTVFVGIVLPDGQSVAKQLNLSGSRAQNRIRSVK
YGCHYLLHQLKNTQ

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=929607 V1500_RS10430 WP_409305493.1 2124920..2126164(+) (cinA) [Peribacillus sp. SCS-155]
ATGGATGCAGAAATAATAGCGGTTGGCTCTGAGTTATTGCTTGGACAAATCGCAAATACGAATGCACAATATTTATCCGT
ACAATTTGCCGAAATGGGGATTAATGTCTTTTATCATACTGTGGTCGGCGATAATCACAAGAGGCTTGAATCTGCTCTCG
AAATCGCAGAATCCCGGTCCAATCTTATTGTTTTTACAGGCGGTCTGGGTCCGACGAAGGACGACTTAACAAAAGAAACA
ATCGCCCGCCACCTTGGGAAAAAACTCGTCTATGACGAACCGGCGCTTCATTCAATAGAAGAATATTTCAGGAAGACTGG
CCGTGAAATGACAGAGAACAATAGAAAACAGGCACTCATCATTGATGGGTCGGAAGTGCTCCCAAATGATCATGGAATGG
CACCAGGAATGGTTATAAAAGAAAAAGGCATTACGTATATGCTCCTTCCTGGACCGCCGAAAGAAATGCAGCCGATGTTT
ACTGCCTATGGTTTTGAAAACCTCATGAAAAAAATGGACAAGCACGAAAGAATCGAATCAAAGGTGCTTCGCTTCTTTGG
CATTGGAGAATCATTGCTTGAGACGAAAATCGAAGACCTTCTTGACAAGCAGACAAATCCCACGATTGCTCCGCTTGCGG
CTGATGGGGAAGTTACACTTCGGATTAGTGCAAAGCATTCCTCACGTGAAAAATGTGAAGAAATGATTTCTGAATCTGAA
AAAGAAATTCTTCGCCGCGTTGGAGAGTTTTATTACGGAGCAGACCAGACTTCCTTGATCAAGGAGCTAGTAAAAGAATT
AACAGTCCGCAAGCTGTCCATTTCTGCTGCAGAGAGTCTTACAGGAGGAATGTTCCAGGAACAGCTGACGAGCATTCCTG
GAGCCGGGAAAGTATTTAAAGGCGGAATTGTAAGTTATACCAATGAAGTCAAAGCAGAAGTACTTGGTGTCAGCGAAGAT
ACAATCAAGAAATTTGGCGTAGTGAGCGAGGAATGTGCTCTGGAGATGGCACAAAATGTGCGTAAGCAGCTTGGTGCTGA
TGTTGGGATCAGCTTTACAGGTGTAGCAGGGCCGGATGAACAGGAAGGGAAACCTGTGGGCACAGTGTTTGTCGGCATTG
TTCTTCCAGATGGCCAGTCGGTGGCAAAACAGCTGAATTTATCTGGAAGCAGGGCACAGAACCGTATTCGCAGTGTAAAA
TATGGATGCCACTACTTGCTGCATCAACTAAAAAATACACAGTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.169

98.792

0.585
  cinA Streptococcus pneumoniae TIGR4

45.714

100

0.464
  cinA Streptococcus mitis SK321

45.714

100

0.464
  cinA Streptococcus pneumoniae Rx1

45.238

100

0.459
  cinA Streptococcus pneumoniae R6

45.238

100

0.459
  cinA Streptococcus mitis NCTC 12261

45.433

100

0.457
  cinA Streptococcus pneumoniae D39

45

100

0.457
  cinA Streptococcus mutans UA159

45.05

97.585

0.44
  cinA Streptococcus suis isolate S10

41.206

96.135

0.396