Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   V1502_RS07660 Genome accession   NZ_CP143546
Coordinates   1579508..1580545 (+) Length   345 a.a.
NCBI ID   WP_409253768.1    Uniprot ID   -
Organism   Bacillus sp. SCS-153A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1574508..1585545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1502_RS07635 (V1502_07635) - 1574735..1574992 (+) 258 WP_409253763.1 DUF3243 domain-containing protein -
  V1502_RS07640 (V1502_07640) - 1575365..1576156 (+) 792 WP_409253764.1 DUF3388 domain-containing protein -
  V1502_RS07645 (V1502_07645) - 1576175..1577089 (+) 915 WP_409253765.1 helix-turn-helix domain-containing protein -
  V1502_RS07650 (V1502_07650) pgsA 1577138..1577716 (+) 579 WP_409253766.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V1502_RS07655 (V1502_07655) cinA 1577845..1579092 (+) 1248 WP_409253767.1 competence/damage-inducible protein A Machinery gene
  V1502_RS07660 (V1502_07660) recA 1579508..1580545 (+) 1038 WP_409253768.1 recombinase RecA Machinery gene
  V1502_RS07665 (V1502_07665) rny 1580819..1582381 (+) 1563 WP_409253769.1 ribonuclease Y -
  V1502_RS07670 (V1502_07670) - 1582546..1583346 (+) 801 WP_409254304.1 TIGR00282 family metallophosphoesterase -
  V1502_RS07675 (V1502_07675) spoVS 1584406..1584666 (+) 261 WP_119116493.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37574.79 Da        Isoelectric Point: 4.9113

>NTDB_id=929558 V1502_RS07660 WP_409253768.1 1579508..1580545(+) (recA) [Bacillus sp. SCS-153A]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTERNIVTIPSGSLALDVALGVGGYPRGRIIETYGPESSGKTTVALHAIAE
VQAQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT
KVKVVKNKVAPPFRVAEVDIMYGQGISREGEIIDMGSELDIVQKSGAWYSYNEERLGQGRENAKIFLKENPEIRNEIMQK
IRDHYGLDTGRAETEEGQDELLLDE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=929558 V1502_RS07660 WP_409253768.1 1579508..1580545(+) (recA) [Bacillus sp. SCS-153A]
GTGAGCGATCGTCAAGCTGCCTTAGACATGGCACTTAAACAAATTGAAAAGCAATTCGGTAAAGGTTCTATCATGAAATT
GGGAGAACAGACTGAAAGAAATATAGTAACAATACCAAGTGGTTCATTGGCATTGGATGTAGCCCTCGGAGTGGGCGGAT
ATCCGCGCGGAAGAATCATTGAAACATACGGACCGGAATCTTCAGGTAAAACAACAGTTGCCCTTCATGCAATTGCTGAA
GTTCAGGCGCAGGGAGGCCAAGCGGCATTTATCGATGCTGAGCATGCCCTTGATCCTGTCTATGCACAAAAACTGGGTGT
AAACATTGATGAACTTCTGCTTTCCCAGCCGGATACTGGTGAGCAGGCATTGGAAATTGCTGAAGCGCTTGTTCGAAGCG
GTGCGGTTGACATCCTTGTTATCGACTCTGTAGCTGCATTGGTGCCTAAGGCTGAAATTGAAGGCGAGATGGGTGACTCT
CACGTTGGTCTTCAAGCACGTTTGATGTCTCAGGCCCTCAGAAAGCTTTCAGGTGCAATCAATAAATCTAAAACAATTGC
AATCTTTATTAACCAGATCCGTGAAAAAGTCGGTGTCATGTTCGGTAACCCGGAAACTACTCCTGGTGGACGCGCGTTGA
AGTTCTATTCTTCTGTCCGTCTTGAAGTCCGTCGTGCTGAGACACTTAAGCAAGGAAATGAAATGGTAGGTAACAAAACT
AAAGTCAAGGTAGTAAAGAACAAGGTGGCTCCGCCATTCAGGGTTGCTGAAGTTGATATTATGTACGGTCAAGGGATCTC
CAGAGAAGGTGAAATCATCGATATGGGATCTGAGCTTGATATCGTTCAAAAGAGCGGTGCATGGTATTCTTATAATGAAG
AGCGTCTTGGTCAAGGACGGGAAAATGCTAAAATTTTCTTGAAGGAAAATCCTGAAATCCGTAATGAAATCATGCAGAAA
ATCCGTGACCATTATGGTTTGGATACAGGCAGGGCTGAAACGGAAGAAGGTCAAGATGAATTGCTGCTGGACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

88.754

95.362

0.846
  recA Latilactobacillus sakei subsp. sakei 23K

72.911

100

0.733
  recA Streptococcus pneumoniae Rx1

66.859

100

0.672
  recA Streptococcus pneumoniae D39

66.859

100

0.672
  recA Streptococcus pneumoniae R6

66.859

100

0.672
  recA Streptococcus pneumoniae TIGR4

66.859

100

0.672
  recA Streptococcus mitis NCTC 12261

67.347

99.42

0.67
  recA Streptococcus mitis SK321

66.86

99.71

0.667
  recA Streptococcus mutans UA159

69.301

95.362

0.661
  recA Streptococcus pyogenes NZ131

68.902

95.072

0.655
  recA Neisseria gonorrhoeae strain FA1090

66.372

98.261

0.652
  recA Neisseria gonorrhoeae MS11

66.372

98.261

0.652
  recA Neisseria gonorrhoeae MS11

66.372

98.261

0.652
  recA Lactococcus lactis subsp. cremoris KW2

66.364

95.652

0.635
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.824

98.551

0.629
  recA Ralstonia pseudosolanacearum GMI1000

69.01

90.725

0.626
  recA Vibrio cholerae strain A1552

66.044

93.043

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.044

93.043

0.614
  recA Acinetobacter baumannii D1279779

61.159

100

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

94.783

0.603
  recA Pseudomonas stutzeri DSM 10701

65

92.754

0.603
  recA Helicobacter pylori 26695

63.385

94.203

0.597
  recA Helicobacter pylori strain NCTC11637

63.385

94.203

0.597
  recA Glaesserella parasuis strain SC1401

64.062

92.754

0.594
  recA Acinetobacter baylyi ADP1

62.733

93.333

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

94.203

0.565