Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V1502_RS07655 Genome accession   NZ_CP143546
Coordinates   1577845..1579092 (+) Length   415 a.a.
NCBI ID   WP_409253767.1    Uniprot ID   -
Organism   Bacillus sp. SCS-153A     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1572845..1584092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1502_RS07630 (V1502_07630) ymfI 1573401..1574123 (+) 723 WP_409253762.1 elongation factor P 5-aminopentanone reductase -
  V1502_RS07635 (V1502_07635) - 1574735..1574992 (+) 258 WP_409253763.1 DUF3243 domain-containing protein -
  V1502_RS07640 (V1502_07640) - 1575365..1576156 (+) 792 WP_409253764.1 DUF3388 domain-containing protein -
  V1502_RS07645 (V1502_07645) - 1576175..1577089 (+) 915 WP_409253765.1 helix-turn-helix domain-containing protein -
  V1502_RS07650 (V1502_07650) pgsA 1577138..1577716 (+) 579 WP_409253766.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V1502_RS07655 (V1502_07655) cinA 1577845..1579092 (+) 1248 WP_409253767.1 competence/damage-inducible protein A Machinery gene
  V1502_RS07660 (V1502_07660) recA 1579508..1580545 (+) 1038 WP_409253768.1 recombinase RecA Machinery gene
  V1502_RS07665 (V1502_07665) rny 1580819..1582381 (+) 1563 WP_409253769.1 ribonuclease Y -
  V1502_RS07670 (V1502_07670) - 1582546..1583346 (+) 801 WP_409254304.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45324.84 Da        Isoelectric Point: 5.4135

>NTDB_id=929557 V1502_RS07655 WP_409253767.1 1577845..1579092(+) (cinA) [Bacillus sp. SCS-153A]
MNAEIIAVGSELLLGQIVNSNAKFLSEQLAEIGVNVYFHTVVGDNPERLKKAIEIAESRAQLIIFTGGLGPTKDDLTKET
IAKHLDTELEKDEDALKYIKDYFKRAQREMTPNNEKQAVVLKGSEVLKNDQGMAPGMFLVKATRQYMLLPGPPSEMIPMF
KNYGRPSIEKALGRQETIASRVLRFFGIGEAELETELMDLIEAQSNPTVAPLASDGEVTLRLTAKDASKEKAETMLDTLE
GEILKRARPYFYGYNDTTLMEETSNALKENELTIACAESLTGGLFQSQLTSISGAGSILKGGIVCYSTEIKKKLLNVSPN
TIAIHGTVSEPCARELAENVRGMFDSDIGISFTGAAGPGPHEGKDEGTIWIGIARKGEKTKTFLLNLAGTRNGNRARTVK
YGCHFLLKELKGENG

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=929557 V1502_RS07655 WP_409253767.1 1577845..1579092(+) (cinA) [Bacillus sp. SCS-153A]
ATGAATGCAGAAATCATTGCCGTTGGTTCAGAATTGCTGCTAGGGCAAATTGTGAATTCAAACGCAAAGTTTTTATCAGA
GCAGCTCGCTGAAATAGGTGTCAATGTATATTTTCATACAGTTGTCGGCGATAACCCAGAAAGGCTGAAAAAGGCTATTG
AAATTGCTGAGTCCCGGGCTCAATTAATTATTTTCACCGGAGGTCTCGGACCGACAAAAGATGACCTGACTAAAGAAACA
ATTGCAAAACACTTAGACACTGAGTTAGAAAAAGATGAAGATGCGTTGAAATATATCAAAGACTATTTTAAAAGGGCCCA
GAGAGAGATGACTCCTAATAATGAGAAGCAGGCAGTGGTCCTGAAAGGATCCGAGGTGCTCAAAAATGACCAGGGTATGG
CACCGGGCATGTTCCTTGTGAAAGCAACGCGCCAATATATGCTGCTTCCAGGGCCGCCATCTGAAATGATCCCAATGTTT
AAAAATTATGGAAGGCCTTCAATTGAAAAAGCGCTGGGAAGACAAGAGACCATTGCATCCCGAGTTTTACGATTTTTCGG
CATAGGCGAAGCAGAGCTTGAGACTGAACTGATGGACCTGATTGAAGCTCAATCGAACCCCACGGTTGCACCGCTTGCTT
CAGACGGCGAAGTTACGCTTAGATTAACGGCTAAAGATGCTTCCAAAGAGAAGGCAGAGACTATGCTTGATACACTGGAA
GGTGAAATCCTCAAAAGAGCAAGACCATATTTCTATGGATACAATGATACAACCTTGATGGAAGAGACCTCGAATGCACT
GAAAGAGAATGAGTTGACGATTGCCTGCGCAGAGAGTCTGACAGGAGGATTGTTTCAGTCTCAGCTGACCTCCATCTCAG
GGGCAGGCTCCATTTTAAAAGGGGGCATTGTCTGTTACTCAACTGAAATTAAGAAGAAACTACTGAATGTTTCCCCAAAC
ACCATTGCCATCCATGGCACAGTAAGTGAACCATGTGCAAGGGAATTGGCTGAAAACGTAAGGGGAATGTTCGATTCGGA
TATCGGCATTAGTTTCACTGGCGCAGCCGGCCCTGGTCCTCACGAAGGAAAAGACGAAGGCACGATATGGATCGGTATTG
CCCGAAAAGGTGAAAAAACAAAAACATTCCTCCTCAACCTGGCAGGGACGAGAAACGGTAATCGTGCAAGGACAGTCAAA
TACGGATGCCATTTCCTATTGAAAGAGTTAAAGGGAGAGAACGGATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

57.213

98.554

0.564
  cinA Streptococcus mitis SK321

47.381

100

0.48
  cinA Streptococcus mitis NCTC 12261

47.143

100

0.477
  cinA Streptococcus pneumoniae TIGR4

46.905

100

0.475
  cinA Streptococcus pneumoniae Rx1

46.429

100

0.47
  cinA Streptococcus pneumoniae R6

46.429

100

0.47
  cinA Streptococcus pneumoniae D39

46.19

100

0.467
  cinA Streptococcus mutans UA159

46.825

91.084

0.427
  cinA Streptococcus suis isolate S10

40.212

91.084

0.366