Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   V1501_RS07755 Genome accession   NZ_CP143545
Coordinates   1527503..1528546 (+) Length   347 a.a.
NCBI ID   WP_409292387.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1522503..1533546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1501_RS07730 (V1501_07730) - 1523084..1523347 (+) 264 WP_409292381.1 DUF3243 domain-containing protein -
  V1501_RS07735 (V1501_07735) - 1523560..1524351 (+) 792 WP_409293289.1 DUF3388 domain-containing protein -
  V1501_RS07740 (V1501_07740) - 1524369..1525256 (+) 888 WP_409292382.1 helix-turn-helix domain-containing protein -
  V1501_RS07745 (V1501_07745) pgsA 1525315..1525926 (+) 612 WP_409292383.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V1501_RS07750 (V1501_07750) cinA 1525945..1527186 (+) 1242 WP_409292385.1 competence/damage-inducible protein A Machinery gene
  V1501_RS07755 (V1501_07755) recA 1527503..1528546 (+) 1044 WP_409292387.1 recombinase RecA Machinery gene
  V1501_RS07760 (V1501_07760) rny 1528852..1530411 (+) 1560 WP_409292388.1 ribonuclease Y -
  V1501_RS07765 (V1501_07765) - 1530575..1531372 (+) 798 WP_409292390.1 TIGR00282 family metallophosphoesterase -
  V1501_RS07770 (V1501_07770) spoVS 1531590..1531850 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37727.83 Da        Isoelectric Point: 4.7348

>NTDB_id=929504 V1501_RS07755 WP_409292387.1 1527503..1528546(+) (recA) [Peribacillus sp. SCS-37]
MSDRQAALEMALKQIEKQFGKGSIMKLGEQTDRVISTISSGSLALDVALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQAGGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSSVRLEVRRAEALKQGNDIMGNRT
KIKVVKNKVAPPFRLAEVDIMYGEGISREGEIIDMGADLDIVQKSGSWYSYNEERLGQGRENSKLFLKENTEIRDEVKQK
IRDHYGLDGDHAAPEEEDDQEELNLID

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=929504 V1501_RS07755 WP_409292387.1 1527503..1528546(+) (recA) [Peribacillus sp. SCS-37]
GTGAGCGATCGTCAAGCAGCGTTGGAAATGGCGTTAAAGCAAATAGAAAAGCAATTTGGCAAAGGTTCAATCATGAAGCT
TGGAGAACAGACAGACCGTGTTATCTCCACTATCTCAAGCGGCTCCCTTGCCCTTGATGTGGCACTCGGGGTAGGCGGCT
ATCCAAGAGGAAGGGTCATTGAAATCTACGGACCTGAGAGCTCAGGTAAAACCACTGTTGCCCTGCATGCCATTGCAGAA
GTTCAGGCAGGAGGCGGACAAGCTGCATTCATTGATGCTGAGCATGCCCTTGATCCTGTCTATGCTCAAAAGCTTGGGGT
AAATATTGATGAATTATTGCTTTCGCAGCCGGATACAGGGGAACAGGCATTGGAAATTGCTGAAGCATTAGTACGAAGCG
GTGCGGTAGACATCATCGTCATCGACTCGGTAGCAGCCCTTGTACCAAAAGCCGAGATTGAAGGCGAGATGGGTGACTCC
CACGTCGGCCTGCAGGCCCGTTTGATGTCCCAGGCGCTCCGTAAGCTTTCTGGCGCCATCAACAAGTCAAAGACAATTGC
AATCTTCATAAACCAGATTCGTGAGAAAGTCGGCGTCATGTTCGGAAACCCTGAAATTACTCCCGGCGGCCGTGCGCTGA
AATTCTATTCTTCTGTCCGTCTGGAAGTCCGCCGTGCAGAAGCATTGAAGCAGGGGAATGACATAATGGGTAACAGAACC
AAGATTAAAGTTGTCAAGAACAAGGTAGCTCCTCCATTCCGTCTTGCGGAAGTGGACATTATGTACGGTGAAGGGATTTC
CCGTGAAGGCGAAATCATCGATATGGGTGCAGACCTTGATATTGTACAAAAAAGCGGTTCCTGGTATTCCTACAATGAAG
AGAGGCTTGGTCAGGGTCGTGAGAATTCCAAGCTCTTCCTGAAAGAGAATACTGAAATCCGTGATGAAGTAAAACAAAAA
ATCCGTGACCATTATGGCTTAGACGGTGATCATGCAGCTCCTGAAGAAGAGGATGACCAGGAAGAACTCAACCTGATAGA
TTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.879

95.101

0.836
  recA Latilactobacillus sakei subsp. sakei 23K

72.622

100

0.726
  recA Streptococcus mutans UA159

66.86

99.135

0.663
  recA Streptococcus mitis NCTC 12261

64.957

100

0.657
  recA Streptococcus mitis SK321

64.672

100

0.654
  recA Streptococcus pneumoniae Rx1

65.318

99.712

0.651
  recA Streptococcus pneumoniae D39

65.318

99.712

0.651
  recA Streptococcus pneumoniae R6

65.318

99.712

0.651
  recA Streptococcus pneumoniae TIGR4

65.318

99.712

0.651
  recA Streptococcus pyogenes NZ131

67.683

94.524

0.64
  recA Lactococcus lactis subsp. cremoris KW2

66.061

95.101

0.628
  recA Neisseria gonorrhoeae MS11

65.749

94.236

0.62
  recA Neisseria gonorrhoeae strain FA1090

65.749

94.236

0.62
  recA Neisseria gonorrhoeae MS11

65.749

94.236

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.941

97.983

0.617
  recA Ralstonia pseudosolanacearum GMI1000

68.051

90.202

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.109

92.507

0.602
  recA Vibrio cholerae strain A1552

65.109

92.507

0.602
  recA Helicobacter pylori strain NCTC11637

63.692

93.66

0.597
  recA Helicobacter pylori 26695

63.385

93.66

0.594
  recA Glaesserella parasuis strain SC1401

64.375

92.219

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

94.236

0.591
  recA Acinetobacter baumannii D1279779

60.177

97.695

0.588
  recA Pseudomonas stutzeri DSM 10701

63.438

92.219

0.585
  recA Acinetobacter baylyi ADP1

58.551

99.424

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.61

93.084

0.573