Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V1501_RS07750 Genome accession   NZ_CP143545
Coordinates   1525945..1527186 (+) Length   413 a.a.
NCBI ID   WP_409292385.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-37     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1520945..1532186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1501_RS07725 (V1501_07725) ymfI 1522278..1523003 (+) 726 WP_409292379.1 elongation factor P 5-aminopentanone reductase -
  V1501_RS07730 (V1501_07730) - 1523084..1523347 (+) 264 WP_409292381.1 DUF3243 domain-containing protein -
  V1501_RS07735 (V1501_07735) - 1523560..1524351 (+) 792 WP_409293289.1 DUF3388 domain-containing protein -
  V1501_RS07740 (V1501_07740) - 1524369..1525256 (+) 888 WP_409292382.1 helix-turn-helix domain-containing protein -
  V1501_RS07745 (V1501_07745) pgsA 1525315..1525926 (+) 612 WP_409292383.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V1501_RS07750 (V1501_07750) cinA 1525945..1527186 (+) 1242 WP_409292385.1 competence/damage-inducible protein A Machinery gene
  V1501_RS07755 (V1501_07755) recA 1527503..1528546 (+) 1044 WP_409292387.1 recombinase RecA Machinery gene
  V1501_RS07760 (V1501_07760) rny 1528852..1530411 (+) 1560 WP_409292388.1 ribonuclease Y -
  V1501_RS07765 (V1501_07765) - 1530575..1531372 (+) 798 WP_409292390.1 TIGR00282 family metallophosphoesterase -
  V1501_RS07770 (V1501_07770) spoVS 1531590..1531850 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44835.79 Da        Isoelectric Point: 5.3826

>NTDB_id=929503 V1501_RS07750 WP_409292385.1 1525945..1527186(+) (cinA) [Peribacillus sp. SCS-37]
MNAEIIAVGSELLLGQIANTNAKFLSQQLAELGINVYFHTVVGDNAGRLKQALEIAHERSNLIILTGGLGPTKDDMTKET
AAEHLGLKLVTDEEAMTSIIEYFKKAGRDMTPNNKKQALVLEGAAVLPNNHGMAPGMMAEKDGKTYMLLPGPPKEMEPMF
IESGFKLLFDKLDVQERIESKVLRFFGIGESLLETKIEDLLEKQTNPTLAPLAADGEVTLRITAKHASKEKVQKLIAEME
EEILARVGEFHYGDGDTSLMKEVVKELSSKRYTISSAESLTGGMFTEQLTAISGAGLILKGGVVSYATEAKQKILNIKDE
TVEKYGVVSAECAIEMAENVRSLLDSDVGISFTGVAGPMEMEGHPVGTVFIGIAVKGQKTAVEKLSLTGSRAQNRIRSVK
YGCHYLLKELGMK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=929503 V1501_RS07750 WP_409292385.1 1525945..1527186(+) (cinA) [Peribacillus sp. SCS-37]
ATGAATGCAGAAATAATTGCCGTCGGTTCAGAGCTTTTACTGGGCCAGATCGCAAACACCAATGCAAAGTTCCTTTCCCA
GCAGCTCGCTGAACTTGGGATCAATGTCTATTTCCATACAGTGGTCGGGGATAATGCCGGCCGCCTCAAGCAGGCTCTTG
AAATTGCACATGAAAGATCAAATCTTATCATCCTCACCGGCGGATTGGGTCCTACAAAGGATGACATGACGAAGGAAACA
GCCGCAGAGCATCTCGGGCTAAAGCTAGTAACTGATGAAGAAGCCATGACATCCATAATAGAATACTTCAAGAAAGCCGG
GCGTGATATGACGCCGAACAATAAGAAGCAGGCCCTGGTCCTTGAAGGGGCAGCCGTTCTTCCGAATAACCATGGCATGG
CGCCTGGCATGATGGCAGAAAAAGACGGGAAAACATACATGCTTCTGCCTGGGCCTCCCAAAGAAATGGAGCCTATGTTC
ATCGAGTCAGGTTTCAAGCTGCTGTTTGATAAACTGGACGTCCAGGAGAGAATCGAATCAAAGGTACTCCGCTTCTTCGG
TATAGGGGAATCCCTATTAGAGACCAAAATAGAGGACCTTCTTGAAAAGCAGACCAATCCTACACTTGCCCCGCTGGCAG
CTGACGGGGAAGTGACCCTGAGGATAACGGCCAAGCATGCCTCAAAGGAAAAGGTACAGAAACTGATAGCTGAGATGGAG
GAAGAAATCCTCGCACGCGTGGGAGAATTCCATTATGGCGACGGAGACACTTCCCTGATGAAGGAAGTGGTCAAGGAGCT
CAGCAGCAAGCGGTATACCATCTCCTCGGCTGAAAGCCTCACCGGAGGAATGTTCACAGAGCAGCTGACTGCCATTTCAG
GTGCCGGTCTCATCCTGAAGGGCGGAGTTGTCAGCTATGCAACAGAAGCCAAACAGAAGATCCTGAATATTAAAGATGAG
ACTGTTGAAAAGTATGGAGTGGTCAGCGCCGAATGTGCCATTGAAATGGCTGAGAATGTGCGGTCACTTCTTGATTCCGA
TGTCGGCATCAGCTTTACAGGGGTAGCCGGACCGATGGAGATGGAAGGCCATCCAGTAGGAACCGTGTTCATCGGAATCG
CGGTCAAAGGGCAAAAAACAGCAGTCGAAAAGCTCAGCCTCACCGGCAGCCGGGCACAAAACCGGATCCGCTCCGTCAAA
TACGGCTGCCATTACCTGCTTAAAGAACTGGGAATGAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-162)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.637

99.516

0.584
  cinA Streptococcus mitis NCTC 12261

49.286

100

0.501
  cinA Streptococcus mitis SK321

49.048

100

0.499
  cinA Streptococcus pneumoniae TIGR4

49.048

100

0.499
  cinA Streptococcus pneumoniae Rx1

48.571

100

0.494
  cinA Streptococcus pneumoniae R6

48.571

100

0.494
  cinA Streptococcus pneumoniae D39

48.333

100

0.492
  cinA Streptococcus mutans UA159

46.535

97.821

0.455
  cinA Streptococcus suis isolate S10

44.18

91.525

0.404