Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   V1499_RS09625 Genome accession   NZ_CP143543
Coordinates   1940717..1941760 (+) Length   347 a.a.
NCBI ID   WP_409275756.1    Uniprot ID   -
Organism   Neobacillus sp. SCS-31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1935717..1946760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1499_RS09600 (V1499_09600) - 1936400..1936657 (+) 258 WP_053599944.1 DUF3243 domain-containing protein -
  V1499_RS09605 (V1499_09605) - 1936809..1937600 (+) 792 WP_409275750.1 DUF3388 domain-containing protein -
  V1499_RS09610 (V1499_09610) - 1937613..1938524 (+) 912 WP_409275752.1 helix-turn-helix domain-containing protein -
  V1499_RS09615 (V1499_09615) pgsA 1938583..1939161 (+) 579 WP_409275754.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V1499_RS09620 (V1499_09620) cinA 1939192..1940433 (+) 1242 WP_409275755.1 competence/damage-inducible protein A Machinery gene
  V1499_RS09625 (V1499_09625) recA 1940717..1941760 (+) 1044 WP_409275756.1 recombinase RecA Machinery gene
  V1499_RS09630 (V1499_09630) rny 1942120..1943682 (+) 1563 WP_409275758.1 ribonuclease Y -
  V1499_RS09635 (V1499_09635) - 1944007..1944804 (+) 798 WP_409275759.1 TIGR00282 family metallophosphoesterase -
  V1499_RS09640 (V1499_09640) spoVS 1944978..1945238 (+) 261 WP_010193268.1 stage V sporulation protein SpoVS -
  V1499_RS09645 (V1499_09645) - 1945395..1946318 (+) 924 WP_409275763.1 dipeptidase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37608.81 Da        Isoelectric Point: 4.9183

>NTDB_id=929464 V1499_RS09625 WP_409275756.1 1940717..1941760(+) (recA) [Neobacillus sp. SCS-31]
MSDRQAALEMALKQIEKQFGKGSIMKLGEKTETRISTIPSGSLALDAALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQAAGGQAAFIDAEHALDPAYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAETLKQGTDMVGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEVIDIGSELDIVQKSGSWYSYNEERVGQGRENAKIFLKENPSVLREIQQK
IRDHYGLDGEKTVTEADEDPEQFELID

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=929464 V1499_RS09625 WP_409275756.1 1940717..1941760(+) (recA) [Neobacillus sp. SCS-31]
GTGAGTGATCGTCAGGCTGCCTTAGAAATGGCCCTAAAGCAAATAGAAAAACAATTCGGCAAAGGTTCAATTATGAAGCT
CGGTGAAAAGACGGAGACAAGGATTTCCACAATCCCTAGCGGCTCGCTCGCACTTGATGCAGCCCTTGGGGTAGGAGGAT
ATCCGAGGGGACGTATCATCGAAATTTATGGACCGGAAAGCTCGGGTAAAACGACAGTGGCGCTCCATGCAATCGCTGAA
GTCCAGGCTGCTGGCGGCCAGGCTGCTTTCATTGATGCCGAGCATGCTCTTGACCCGGCATATGCGCAAAAGCTTGGAGT
CAACATTGATGAGCTTCTTCTTTCCCAGCCGGATACCGGAGAACAGGCTCTTGAAATTGCTGAGGCGCTCGTCCGAAGCG
GCGCGGTGGACATCGTTGTCATCGACTCCGTTGCGGCATTGGTTCCAAAAGCTGAGATTGAAGGGGAAATGGGAGACTCA
CACGTCGGTTTGCAGGCCCGCCTTATGTCCCAGGCACTCCGCAAACTATCCGGGGCAATCAACAAATCGAAGACGATCGC
CATTTTCATCAACCAGATCCGTGAAAAAGTCGGCGTCATGTTCGGAAACCCTGAAACAACTCCGGGCGGCCGCGCTTTGA
AGTTCTATTCTACGATCCGCCTCGAAGTACGCCGTGCCGAAACATTGAAGCAGGGCACCGATATGGTTGGGAACAAAACA
AAAATCAAGGTTGTCAAAAATAAAGTCGCGCCTCCGTTCAGGACAGCGGAAGTCGATATTATGTACGGTGAAGGAATCTC
CAAGGAAGGCGAAGTCATTGACATTGGCTCCGAACTGGACATTGTCCAAAAGAGCGGCTCCTGGTATTCCTATAATGAGG
AGAGGGTTGGACAAGGCCGGGAAAATGCGAAAATTTTCTTAAAGGAAAACCCTTCTGTCCTGCGCGAGATTCAGCAGAAA
ATCCGCGATCATTATGGCCTGGACGGCGAAAAGACCGTCACGGAAGCGGATGAGGATCCCGAACAGTTTGAACTGATTGA
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

88.889

95.965

0.853
  recA Latilactobacillus sakei subsp. sakei 23K

76.615

93.66

0.718
  recA Streptococcus pneumoniae TIGR4

68.915

98.271

0.677
  recA Streptococcus pneumoniae Rx1

68.915

98.271

0.677
  recA Streptococcus pneumoniae D39

68.915

98.271

0.677
  recA Streptococcus pneumoniae R6

68.915

98.271

0.677
  recA Streptococcus mitis SK321

66.667

100

0.674
  recA Streptococcus mitis NCTC 12261

66.382

100

0.671
  recA Streptococcus mutans UA159

66.86

99.135

0.663
  recA Streptococcus pyogenes NZ131

68.902

94.524

0.651
  recA Lactococcus lactis subsp. cremoris KW2

67.273

95.101

0.64
  recA Neisseria gonorrhoeae strain FA1090

64.497

97.406

0.628
  recA Neisseria gonorrhoeae MS11

64.497

97.406

0.628
  recA Neisseria gonorrhoeae MS11

64.497

97.406

0.628
  recA Ralstonia pseudosolanacearum GMI1000

65.741

93.372

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.647

97.983

0.614
  recA Helicobacter pylori strain NCTC11637

61.516

98.847

0.608
  recA Helicobacter pylori 26695

61.516

98.847

0.608
  recA Vibrio cholerae strain A1552

63.863

92.507

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.863

92.507

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

94.236

0.591
  recA Acinetobacter baylyi ADP1

58.551

99.424

0.582
  recA Acinetobacter baumannii D1279779

58.721

99.135

0.582
  recA Pseudomonas stutzeri DSM 10701

62.5

92.219

0.576
  recA Glaesserella parasuis strain SC1401

62.187

92.219

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.991

93.084

0.568