Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V1499_RS09620 Genome accession   NZ_CP143543
Coordinates   1939192..1940433 (+) Length   413 a.a.
NCBI ID   WP_409275755.1    Uniprot ID   -
Organism   Neobacillus sp. SCS-31     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1934192..1945433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1499_RS09595 (V1499_09595) ymfI 1935597..1936319 (+) 723 WP_409275748.1 elongation factor P 5-aminopentanone reductase -
  V1499_RS09600 (V1499_09600) - 1936400..1936657 (+) 258 WP_053599944.1 DUF3243 domain-containing protein -
  V1499_RS09605 (V1499_09605) - 1936809..1937600 (+) 792 WP_409275750.1 DUF3388 domain-containing protein -
  V1499_RS09610 (V1499_09610) - 1937613..1938524 (+) 912 WP_409275752.1 helix-turn-helix domain-containing protein -
  V1499_RS09615 (V1499_09615) pgsA 1938583..1939161 (+) 579 WP_409275754.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V1499_RS09620 (V1499_09620) cinA 1939192..1940433 (+) 1242 WP_409275755.1 competence/damage-inducible protein A Machinery gene
  V1499_RS09625 (V1499_09625) recA 1940717..1941760 (+) 1044 WP_409275756.1 recombinase RecA Machinery gene
  V1499_RS09630 (V1499_09630) rny 1942120..1943682 (+) 1563 WP_409275758.1 ribonuclease Y -
  V1499_RS09635 (V1499_09635) - 1944007..1944804 (+) 798 WP_409275759.1 TIGR00282 family metallophosphoesterase -
  V1499_RS09640 (V1499_09640) spoVS 1944978..1945238 (+) 261 WP_010193268.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44530.09 Da        Isoelectric Point: 5.0019

>NTDB_id=929463 V1499_RS09620 WP_409275755.1 1939192..1940433(+) (cinA) [Neobacillus sp. SCS-31]
MNAEIIAVGSELLLGQITNTNARFLSGQLALIGINVYFHTVVGDNPGRLQQVLEIAESRSDLVIITGGLGPTKDDLTKET
IASHLGVGLEMDEVAMESIELFFKRTNRVMSENNRKQALVLTGSQVLPNDHGMAPGMLLKKGEKLYMLLPGPPSEMEPMF
LTYGIKALTSRQSSQEQIVSRVLRFFGIGEAMLENEIEDLIDSQSNPTIAPLASEGEVTLRLTAKHSILGSAIELLDDTE
KKILDRVGNYFYGYDDTSLMNELAKKLKDTGLTISCAESLTGGMFQEEFTSIPGAGSSLKGGVVCYTNEVKAGILHVKNE
TIEKEGVVSAKCAAELAENVASLMNADIGISFTGVAGPDELEGKPVGTVYIGISLNGKPARVEKLNLGGGRRANRIRTVK
YGCHFLLKHLNEG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=929463 V1499_RS09620 WP_409275755.1 1939192..1940433(+) (cinA) [Neobacillus sp. SCS-31]
GTGAATGCTGAAATTATTGCAGTCGGTTCCGAGCTTTTGCTCGGCCAAATTACGAATACAAACGCGCGCTTCCTTTCCGG
GCAGCTCGCGCTGATTGGAATCAATGTGTACTTCCATACAGTTGTAGGGGATAATCCAGGCCGTCTGCAGCAGGTGCTCG
AAATTGCCGAAAGCCGCTCCGACCTGGTGATCATTACTGGCGGCCTTGGCCCAACGAAAGACGATTTGACGAAAGAGACG
ATTGCCTCCCATTTGGGAGTTGGACTTGAAATGGATGAGGTGGCAATGGAATCGATCGAGCTTTTTTTCAAGCGGACCAA
CCGGGTGATGTCTGAGAACAACCGGAAACAGGCGCTTGTTTTAACAGGTTCTCAGGTGTTGCCGAATGATCACGGGATGG
CGCCGGGCATGCTCCTAAAGAAAGGGGAAAAGCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAAATGGAGCCGATGTTC
CTCACGTACGGCATTAAGGCACTGACCAGCAGGCAGTCCTCCCAGGAGCAAATTGTCTCCAGGGTACTCCGTTTCTTCGG
AATTGGGGAAGCGATGCTTGAGAATGAAATTGAAGATTTGATTGACAGCCAATCAAACCCCACCATCGCCCCGCTCGCTT
CGGAAGGGGAGGTCACTCTCCGCCTGACTGCCAAGCATTCGATTTTGGGAAGTGCCATTGAATTGCTCGATGACACGGAA
AAGAAAATCCTCGACAGGGTTGGCAATTATTTTTATGGGTATGACGATACTTCCCTGATGAATGAGCTAGCCAAAAAATT
GAAGGATACGGGACTGACGATTTCCTGCGCCGAAAGCCTGACCGGCGGGATGTTCCAGGAGGAATTTACAAGCATACCTG
GTGCGGGTTCAAGCCTTAAGGGCGGCGTCGTTTGCTACACGAATGAAGTGAAGGCAGGAATCCTTCATGTCAAAAATGAA
ACGATCGAAAAGGAAGGGGTTGTCAGCGCAAAATGCGCGGCGGAGCTTGCCGAAAACGTCGCCAGCCTGATGAATGCCGA
TATTGGGATCAGTTTCACAGGTGTCGCCGGACCGGATGAACTTGAAGGAAAACCGGTCGGAACCGTTTATATCGGCATCA
GCTTGAACGGGAAGCCAGCCCGTGTGGAGAAGCTGAATCTAGGTGGAGGAAGGCGTGCCAACCGGATCAGGACCGTTAAG
TACGGCTGCCATTTTTTGCTGAAGCATCTGAACGAAGGGTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-167)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.341

99.516

0.6
  cinA Streptococcus mitis SK321

46.905

100

0.477
  cinA Streptococcus mitis NCTC 12261

46.667

100

0.475
  cinA Streptococcus mutans UA159

46.081

100

0.47
  cinA Streptococcus pneumoniae TIGR4

48.139

97.579

0.47
  cinA Streptococcus pneumoniae Rx1

47.643

97.579

0.465
  cinA Streptococcus pneumoniae R6

47.643

97.579

0.465
  cinA Streptococcus pneumoniae D39

47.395

97.579

0.462
  cinA Streptococcus suis isolate S10

40.967

95.157

0.39