Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   V1498_RS13960 Genome accession   NZ_CP143542
Coordinates   2770159..2771202 (-) Length   347 a.a.
NCBI ID   WP_409294313.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2765159..2776202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1498_RS13945 (V1498_13945) spoVS 2766327..2766587 (-) 261 WP_003211281.1 stage V sporulation protein SpoVS -
  V1498_RS13950 (V1498_13950) - 2766805..2767602 (-) 798 WP_409294312.1 TIGR00282 family metallophosphoesterase -
  V1498_RS13955 (V1498_13955) rny 2768294..2769853 (-) 1560 WP_409292388.1 ribonuclease Y -
  V1498_RS13960 (V1498_13960) recA 2770159..2771202 (-) 1044 WP_409294313.1 recombinase RecA Machinery gene
  V1498_RS13965 (V1498_13965) cinA 2771517..2772758 (-) 1242 WP_409294314.1 competence/damage-inducible protein A Machinery gene
  V1498_RS13970 (V1498_13970) pgsA 2772777..2773325 (-) 549 WP_409299294.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V1498_RS13975 (V1498_13975) - 2773447..2774334 (-) 888 WP_409294315.1 helix-turn-helix domain-containing protein -
  V1498_RS13980 (V1498_13980) - 2774352..2775143 (-) 792 WP_409299296.1 DUF3388 domain-containing protein -
  V1498_RS13985 (V1498_13985) - 2775356..2775619 (-) 264 WP_409294316.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37729.80 Da        Isoelectric Point: 4.7942

>NTDB_id=929412 V1498_RS13960 WP_409294313.1 2770159..2771202(-) (recA) [Peribacillus sp. SCS-26]
MSDRQAALEMALKQIEKQFGKGSIMKLGEQTDRVISTISSGSLALDVALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQAGGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKQGNDIMGNRT
KIKVVKNKVAPPFRLAEVDIMYGEGISREGEIIDMGADLDIVQKSGSWYSYNEERLGQGRENSKLFLKENTEIRDEVKRK
IRDHYGLDGDHAAPEEEDDQEELNLID

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=929412 V1498_RS13960 WP_409294313.1 2770159..2771202(-) (recA) [Peribacillus sp. SCS-26]
GTGAGCGATCGTCAAGCAGCGTTGGAAATGGCGTTAAAGCAAATAGAAAAGCAATTTGGCAAAGGTTCAATCATGAAGCT
TGGAGAACAGACAGACCGTGTTATCTCCACTATCTCAAGCGGCTCCCTAGCCCTTGATGTGGCACTCGGGGTAGGCGGCT
ATCCAAGAGGAAGGGTCATTGAAATCTACGGACCTGAGAGCTCAGGTAAAACAACTGTTGCCCTGCATGCCATTGCAGAA
GTTCAGGCAGGAGGCGGACAAGCTGCATTCATCGATGCCGAGCATGCCCTTGATCCTGTCTATGCCCAAAAGCTTGGGGT
AAATATTGATGAATTATTGCTTTCCCAGCCGGATACAGGGGAACAAGCGTTGGAAATTGCTGAAGCATTAGTACGAAGCG
GTGCGGTAGACATCGTCGTCATTGACTCGGTAGCTGCCCTTGTGCCGAAAGCCGAGATTGAAGGGGAGATGGGTGATTCC
CACGTCGGCCTGCAGGCCCGTTTGATGTCCCAGGCGCTCCGTAAGCTTTCTGGTGCCATCAACAAGTCAAAGACCATTGC
GATCTTCATTAACCAGATTCGTGAGAAAGTCGGCGTCATGTTCGGTAACCCTGAAACTACTCCCGGCGGCCGTGCGCTGA
AATTCTACTCTTCTGTCCGCCTGGAAGTCCGCCGTGCAGAAGCATTGAAGCAGGGTAATGACATAATGGGTAACAGAACC
AAGATTAAAGTTGTCAAGAACAAGGTAGCTCCTCCATTCCGCCTGGCGGAAGTGGATATCATGTACGGTGAAGGGATTTC
CCGTGAAGGCGAAATCATCGATATGGGTGCAGACCTTGATATCGTACAAAAAAGCGGTTCCTGGTATTCCTATAATGAAG
AAAGGCTTGGCCAGGGCCGTGAAAATTCCAAGCTCTTCCTGAAAGAGAATACTGAAATCCGTGATGAAGTAAAACGAAAA
ATCCGTGACCATTATGGTTTAGACGGTGATCATGCAGCACCTGAAGAAGAGGATGACCAGGAAGAACTTAACCTGATAGA
TTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

88.485

95.101

0.842
  recA Latilactobacillus sakei subsp. sakei 23K

72.622

100

0.726
  recA Streptococcus mutans UA159

67.442

99.135

0.669
  recA Streptococcus mitis NCTC 12261

65.527

100

0.663
  recA Streptococcus mitis SK321

65.242

100

0.66
  recA Streptococcus pneumoniae Rx1

65.896

99.712

0.657
  recA Streptococcus pneumoniae D39

65.896

99.712

0.657
  recA Streptococcus pneumoniae R6

65.896

99.712

0.657
  recA Streptococcus pneumoniae TIGR4

65.896

99.712

0.657
  recA Streptococcus pyogenes NZ131

68.598

94.524

0.648
  recA Lactococcus lactis subsp. cremoris KW2

66.667

95.101

0.634
  recA Neisseria gonorrhoeae MS11

66.361

94.236

0.625
  recA Neisseria gonorrhoeae strain FA1090

66.361

94.236

0.625
  recA Neisseria gonorrhoeae MS11

66.361

94.236

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.941

97.983

0.617
  recA Ralstonia pseudosolanacearum GMI1000

68.051

90.202

0.614
  recA Helicobacter pylori strain NCTC11637

64.308

93.66

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.109

92.507

0.602
  recA Vibrio cholerae strain A1552

65.109

92.507

0.602
  recA Helicobacter pylori 26695

64

93.66

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

94.236

0.597
  recA Acinetobacter baumannii D1279779

60.472

97.695

0.591
  recA Glaesserella parasuis strain SC1401

64.062

92.219

0.591
  recA Acinetobacter baylyi ADP1

58.551

99.424

0.582
  recA Pseudomonas stutzeri DSM 10701

63.125

92.219

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.562

92.219

0.568