Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V1498_RS13965 Genome accession   NZ_CP143542
Coordinates   2771517..2772758 (-) Length   413 a.a.
NCBI ID   WP_409294314.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-26     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2766517..2777758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1498_RS13950 (V1498_13950) - 2766805..2767602 (-) 798 WP_409294312.1 TIGR00282 family metallophosphoesterase -
  V1498_RS13955 (V1498_13955) rny 2768294..2769853 (-) 1560 WP_409292388.1 ribonuclease Y -
  V1498_RS13960 (V1498_13960) recA 2770159..2771202 (-) 1044 WP_409294313.1 recombinase RecA Machinery gene
  V1498_RS13965 (V1498_13965) cinA 2771517..2772758 (-) 1242 WP_409294314.1 competence/damage-inducible protein A Machinery gene
  V1498_RS13970 (V1498_13970) pgsA 2772777..2773325 (-) 549 WP_409299294.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V1498_RS13975 (V1498_13975) - 2773447..2774334 (-) 888 WP_409294315.1 helix-turn-helix domain-containing protein -
  V1498_RS13980 (V1498_13980) - 2774352..2775143 (-) 792 WP_409299296.1 DUF3388 domain-containing protein -
  V1498_RS13985 (V1498_13985) - 2775356..2775619 (-) 264 WP_409294316.1 DUF3243 domain-containing protein -
  V1498_RS13990 (V1498_13990) ymfI 2775700..2776425 (-) 726 WP_409294317.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44602.43 Da        Isoelectric Point: 5.5306

>NTDB_id=929413 V1498_RS13965 WP_409294314.1 2771517..2772758(-) (cinA) [Peribacillus sp. SCS-26]
MNAEIIAVGSELLLGQIANTNAKFLSQQLAELGINVYFHTVVGDNAGRLKQALEIAHGRSNLIILTGGLGPTKDDMTKET
AAEHLGLQLVTDEEAMASITEYFKKAGREMTPNNKKQALVLEGAAVLPNNHGMAPGMAAEKDGKTYMLLPGPPKEMEPMF
LESGFKLLFNKLDVQERIESKVLRFFGIGESLLETKIEDLLEKQTNPTLAPLAADGEVTLRITAKHASKEKVQELIAEME
GEILSRVGEFHYGDGDTSLMKEVVKELSSKRYTISAAESLTGGMFTEQLTAISGAGLILKGGVVTYATEAKQKILNIKNE
TVEKYGVVSAECAIEMAENVRSLLDSDVGISFTGVAGPMEMEGHPVGTVFIGIAVKGQKTAVEKLSLSGSRAQNRIRSVK
YGCHYLLKELGMK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=929413 V1498_RS13965 WP_409294314.1 2771517..2772758(-) (cinA) [Peribacillus sp. SCS-26]
ATGAATGCAGAAATAATTGCAGTAGGCTCAGAGCTTTTACTGGGCCAGATCGCAAACACCAACGCAAAGTTCCTTTCCCA
GCAGCTCGCTGAACTTGGGATCAATGTCTATTTCCATACAGTGGTCGGGGACAATGCCGGCCGCCTCAAGCAGGCTCTTG
AAATTGCACATGGAAGATCCAATCTTATCATCCTCACCGGCGGATTGGGTCCTACAAAGGATGACATGACGAAGGAAACA
GCCGCAGAGCATCTCGGGCTCCAGCTTGTGACGGATGAAGAAGCAATGGCATCCATTACAGAATACTTTAAAAAAGCCGG
GCGTGAAATGACGCCTAACAATAAGAAGCAGGCCCTGGTCCTTGAAGGGGCGGCTGTTCTTCCGAATAACCATGGCATGG
CGCCTGGCATGGCGGCAGAAAAAGACGGGAAGACCTACATGCTTCTGCCCGGACCGCCTAAGGAAATGGAGCCCATGTTC
CTCGAGTCAGGCTTCAAGCTGCTGTTTAATAAACTGGATGTCCAGGAAAGGATCGAATCAAAGGTACTCCGCTTCTTCGG
GATAGGGGAATCGCTATTAGAGACCAAGATAGAAGACCTTCTTGAAAAGCAGACCAATCCTACACTTGCCCCTCTGGCAG
CTGACGGGGAAGTGACCCTCAGGATAACGGCCAAGCATGCCTCAAAGGAAAAGGTACAGGAACTGATAGCGGAGATGGAG
GGTGAAATCCTCTCTCGTGTCGGCGAATTCCATTATGGCGACGGTGACACATCCTTGATGAAGGAAGTGGTCAAGGAGCT
CAGCAGCAAGCGGTATACCATCTCCGCTGCTGAGAGCCTCACCGGAGGAATGTTCACAGAGCAGCTGACAGCTATTTCAG
GTGCCGGTCTTATCCTGAAGGGCGGCGTTGTCACCTATGCAACGGAAGCCAAACAGAAGATCCTGAATATTAAAAATGAG
ACAGTCGAAAAGTATGGTGTGGTCAGCGCCGAATGTGCCATTGAAATGGCTGAGAATGTGCGGTCGCTTCTTGATTCGGA
CGTCGGTATCAGCTTTACAGGGGTGGCCGGACCCATGGAGATGGAAGGCCATCCTGTAGGAACCGTGTTCATCGGAATCG
CGGTCAAAGGGCAAAAAACAGCAGTCGAAAAGCTCAGCCTCAGCGGCAGCCGGGCACAAAACCGGATCCGCTCCGTCAAA
TACGGCTGCCATTATCTGCTTAAAGAACTCGGAATGAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-162)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.637

99.516

0.584
  cinA Streptococcus mitis SK321

49.762

100

0.506
  cinA Streptococcus pneumoniae TIGR4

49.762

100

0.506
  cinA Streptococcus mitis NCTC 12261

49.524

100

0.504
  cinA Streptococcus pneumoniae Rx1

49.286

100

0.501
  cinA Streptococcus pneumoniae R6

49.286

100

0.501
  cinA Streptococcus pneumoniae D39

49.048

100

0.499
  cinA Streptococcus mutans UA159

45.658

97.579

0.446
  cinA Streptococcus suis isolate S10

43.915

91.525

0.402