Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   V1497_RS08640 Genome accession   NZ_CP143541
Coordinates   1673975..1675018 (+) Length   347 a.a.
NCBI ID   WP_349410567.1    Uniprot ID   -
Organism   Pseudalkalibacillus sp. SCS-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1668975..1680018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1497_RS08615 (V1497_08625) - 1669640..1669900 (+) 261 WP_349410562.1 DUF3243 domain-containing protein -
  V1497_RS08620 (V1497_08630) - 1670081..1670854 (+) 774 WP_349410563.1 DUF3388 domain-containing protein -
  V1497_RS08625 (V1497_08635) - 1670905..1671795 (+) 891 WP_414703613.1 RodZ domain-containing protein -
  V1497_RS08630 (V1497_08640) pgsA 1671933..1672511 (+) 579 WP_349410565.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V1497_RS08635 (V1497_08645) cinA 1672600..1673841 (+) 1242 WP_349410566.1 competence/damage-inducible protein A Machinery gene
  V1497_RS08640 (V1497_08650) recA 1673975..1675018 (+) 1044 WP_349410567.1 recombinase RecA Machinery gene
  V1497_RS08645 (V1497_08655) - 1675298..1676284 (+) 987 WP_349410568.1 nuclease-related domain-containing protein -
  V1497_RS08650 (V1497_08660) rny 1676563..1678128 (+) 1566 WP_349410569.1 ribonuclease Y -
  V1497_RS08655 (V1497_08665) - 1678268..1679062 (+) 795 WP_349410570.1 TIGR00282 family metallophosphoesterase -
  V1497_RS08660 (V1497_08670) spoVS 1679574..1679834 (+) 261 WP_041100119.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37531.44 Da        Isoelectric Point: 4.9062

>NTDB_id=929366 V1497_RS08640 WP_349410567.1 1673975..1675018(+) (recA) [Pseudalkalibacillus sp. SCS-8]
MSDRKAALDMALRQIEKQFGKGSVMKLGEQTENRVSTTSSGSLSLDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
AQRNGGQAAFIDAEHALDPVYAEKLGVDINELLLSQPDTGEQALEIAEALVRSGAVDILIIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAISKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKT
RIKVVKNKVAPPFKTAEVDIMYGEGISKQGEILDIGSDIDVVQKSGAWYSFNGERLGQGRENAKQFLKENEAIESEIYKS
IRTYYQMSTNETAAAAETEEEESDTLV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=929366 V1497_RS08640 WP_349410567.1 1673975..1675018(+) (recA) [Pseudalkalibacillus sp. SCS-8]
ATGAGTGATCGCAAAGCTGCATTAGATATGGCATTACGACAAATAGAAAAGCAATTTGGTAAAGGATCTGTCATGAAGCT
CGGGGAACAAACAGAAAACCGCGTTTCCACGACTTCAAGCGGATCACTCTCGCTAGATATCGCACTTGGAGTAGGTGGAT
ATCCACGAGGAAGAATCATCGAAGTATACGGACCAGAATCCTCTGGTAAAACGACAGTAGCCCTCCATGCAATTGCAGAG
GCGCAACGCAACGGCGGTCAAGCTGCCTTCATCGATGCGGAACACGCACTCGATCCGGTTTACGCTGAGAAGCTCGGAGT
CGACATCAATGAATTGCTGCTTTCCCAGCCGGATACAGGGGAACAAGCGTTGGAAATCGCGGAAGCATTAGTCCGAAGCG
GTGCGGTCGACATTTTGATCATCGACTCCGTAGCTGCATTGGTACCGAAGGCTGAAATCGAAGGGGAAATGGGTGACTCA
CACGTCGGTCTACAAGCCCGTCTGATGTCCCAGGCACTTCGTAAGCTTTCCGGAGCGATCAGCAAGTCGAAGACGACCGC
GATCTTCATTAACCAAATCCGTGAGAAAGTCGGAGTTATGTTTGGAAATCCAGAGACAACTCCTGGTGGACGTGCGTTGA
AGTTCTATTCATCCGTCCGTCTGGAAGTACGTAGAGCAGAAACATTGAAGCAAGGAAACGACATGGTAGGTAACAAGACT
CGTATCAAGGTCGTTAAAAACAAGGTTGCTCCTCCATTCAAGACTGCTGAAGTCGATATCATGTATGGAGAAGGAATCTC
CAAACAAGGTGAGATTCTCGATATCGGTTCAGACATCGATGTCGTTCAAAAGAGCGGCGCCTGGTACTCCTTTAACGGCG
AACGTCTCGGTCAAGGCCGTGAAAACGCCAAGCAGTTCTTGAAGGAAAATGAAGCGATCGAAAGTGAGATCTACAAGTCG
ATTCGTACGTACTATCAAATGAGTACGAACGAAACGGCAGCTGCTGCTGAAACAGAAGAGGAAGAATCCGATACACTCGT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.636

95.101

0.795
  recA Latilactobacillus sakei subsp. sakei 23K

70.058

99.135

0.695
  recA Streptococcus mutans UA159

65.517

100

0.657
  recA Streptococcus pyogenes NZ131

65.043

100

0.654
  recA Streptococcus pneumoniae Rx1

65.13

100

0.651
  recA Streptococcus pneumoniae D39

65.13

100

0.651
  recA Streptococcus pneumoniae R6

65.13

100

0.651
  recA Streptococcus pneumoniae TIGR4

65.13

100

0.651
  recA Streptococcus mitis SK321

65.598

98.847

0.648
  recA Streptococcus mitis NCTC 12261

65.598

98.847

0.648
  recA Lactococcus lactis subsp. cremoris KW2

65.152

95.101

0.62
  recA Vibrio cholerae strain A1552

62.391

98.847

0.617
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.391

98.847

0.617
  recA Neisseria gonorrhoeae MS11

66.049

93.372

0.617
  recA Neisseria gonorrhoeae MS11

66.049

93.372

0.617
  recA Neisseria gonorrhoeae strain FA1090

66.049

93.372

0.617
  recA Acinetobacter baumannii D1279779

60.87

99.424

0.605
  recA Acinetobacter baylyi ADP1

60.231

100

0.602
  recA Ralstonia pseudosolanacearum GMI1000

63.415

94.524

0.599
  recA Pseudomonas stutzeri DSM 10701

61.243

97.406

0.597
  recA Glaesserella parasuis strain SC1401

59.942

98.559

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.515

95.101

0.585
  recA Helicobacter pylori strain NCTC11637

61.994

92.507

0.573
  recA Helicobacter pylori 26695

61.994

92.507

0.573
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.18

92.795

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.076

91.066

0.556