Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V1497_RS08635 Genome accession   NZ_CP143541
Coordinates   1672600..1673841 (+) Length   413 a.a.
NCBI ID   WP_349410566.1    Uniprot ID   -
Organism   Pseudalkalibacillus sp. SCS-8     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1667600..1678841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1497_RS08610 (V1497_08620) ymfI 1668829..1669554 (+) 726 WP_349410561.1 elongation factor P 5-aminopentanone reductase -
  V1497_RS08615 (V1497_08625) - 1669640..1669900 (+) 261 WP_349410562.1 DUF3243 domain-containing protein -
  V1497_RS08620 (V1497_08630) - 1670081..1670854 (+) 774 WP_349410563.1 DUF3388 domain-containing protein -
  V1497_RS08625 (V1497_08635) - 1670905..1671795 (+) 891 WP_414703613.1 RodZ domain-containing protein -
  V1497_RS08630 (V1497_08640) pgsA 1671933..1672511 (+) 579 WP_349410565.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V1497_RS08635 (V1497_08645) cinA 1672600..1673841 (+) 1242 WP_349410566.1 competence/damage-inducible protein A Machinery gene
  V1497_RS08640 (V1497_08650) recA 1673975..1675018 (+) 1044 WP_349410567.1 recombinase RecA Machinery gene
  V1497_RS08645 (V1497_08655) - 1675298..1676284 (+) 987 WP_349410568.1 nuclease-related domain-containing protein -
  V1497_RS08650 (V1497_08660) rny 1676563..1678128 (+) 1566 WP_349410569.1 ribonuclease Y -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45046.08 Da        Isoelectric Point: 4.5835

>NTDB_id=929365 V1497_RS08635 WP_349410566.1 1672600..1673841(+) (cinA) [Pseudalkalibacillus sp. SCS-8]
MNAEVIAIGSELLLGQIANTNGQFISKHLAEEGINVYYHTVVGDNKQRLIGSIETAEKRSDLLIFTGGLGPTKDDLTKET
IAEHLGVSLVENEEAMALIEGYYAKTGQTMSENNKRQALVFEGAEVLPNNNGMAPGMALQQNGTTYVLLPGPPKEMQPMF
MNYVIPYVKGASQEDALIHSRVLRFYGIGESALETRIMDLIDKQTNPTIAPLAGHFEVTLRLTAKCDTKEQGEEMIDQLE
KEILDRVGEYFYGYNETTLAAEVMQKLQDTDQTLACAESLTGGYFGHDLTKLSGIGQVFLGGIICYQNEIKRDHLKIPQS
VLDNEGAVSEKCAKLMAENVRSLFDSDYGISFTGVAGPNDMEGKSPGTVFIGVASESGTNVYPLQLAGGRNAVRSRTVNY
GLFYLLKELSGKA

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=929365 V1497_RS08635 WP_349410566.1 1672600..1673841(+) (cinA) [Pseudalkalibacillus sp. SCS-8]
ATGAATGCAGAAGTCATTGCGATTGGTTCCGAGCTTCTCCTCGGACAAATTGCGAATACAAACGGACAATTCATCTCCAA
ACATTTGGCAGAAGAAGGGATTAATGTTTATTATCACACCGTCGTCGGTGATAACAAACAACGGCTCATCGGAAGCATTG
AAACAGCAGAGAAGAGATCCGACCTGCTCATCTTTACAGGAGGACTCGGACCGACAAAGGATGATTTGACAAAAGAAACC
ATCGCTGAGCATCTAGGAGTTTCCCTTGTCGAAAATGAAGAAGCAATGGCCTTGATCGAAGGGTACTATGCGAAAACGGG
TCAGACAATGTCTGAGAACAATAAGCGACAAGCCCTTGTTTTTGAAGGAGCGGAAGTCCTACCTAATAATAATGGAATGG
CTCCGGGGATGGCGCTTCAACAGAATGGAACGACTTATGTGCTTTTACCTGGACCGCCTAAAGAAATGCAGCCGATGTTC
ATGAATTATGTCATCCCTTATGTGAAAGGGGCATCCCAAGAAGACGCACTCATCCATTCAAGAGTTCTGCGATTTTATGG
GATTGGCGAATCGGCACTTGAAACCAGAATCATGGATCTGATCGATAAGCAGACAAATCCGACCATTGCTCCTTTGGCAG
GACATTTTGAGGTGACGCTTCGTTTGACGGCAAAGTGTGATACGAAAGAACAAGGGGAAGAGATGATCGATCAGCTCGAA
AAAGAAATCCTTGATCGGGTCGGAGAATATTTCTATGGATATAATGAAACCACTCTTGCAGCTGAGGTCATGCAGAAATT
ACAAGATACCGATCAAACGTTAGCATGTGCGGAAAGCTTGACGGGAGGTTATTTCGGTCACGATCTGACGAAGCTCTCTG
GAATCGGTCAGGTTTTCCTTGGGGGAATCATCTGTTATCAGAATGAAATTAAAAGAGACCACCTGAAGATTCCACAAAGC
GTATTAGATAATGAAGGAGCAGTCAGCGAAAAGTGTGCAAAACTGATGGCTGAAAATGTCCGATCCCTTTTCGATAGTGA
TTACGGTATCAGCTTCACTGGTGTCGCTGGTCCGAATGATATGGAAGGGAAATCGCCTGGAACAGTCTTTATCGGAGTTG
CTTCTGAATCGGGAACGAATGTCTACCCGCTTCAACTTGCCGGTGGGCGTAATGCAGTGCGAAGCCGGACCGTCAATTAT
GGACTCTTCTACCTCCTGAAGGAATTGAGTGGAAAGGCATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

53.041

99.516

0.528
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.467
  cinA Streptococcus mitis SK321

46.062

100

0.467
  cinA Streptococcus pneumoniae Rx1

45.823

100

0.465
  cinA Streptococcus pneumoniae TIGR4

45.823

100

0.465
  cinA Streptococcus pneumoniae R6

45.823

100

0.465
  cinA Streptococcus pneumoniae D39

45.585

100

0.462
  cinA Streptococcus mutans UA159

44.279

97.337

0.431
  cinA Streptococcus suis isolate S10

40.561

94.915

0.385