Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VSY18_RS18965 Genome accession   NZ_CP142670
Coordinates   3682085..3683116 (-) Length   343 a.a.
NCBI ID   WP_048530451.1    Uniprot ID   A0A1J9T4U3
Organism   Bacillus albus strain YK87     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3677085..3688116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSY18_RS18945 (VSY18_18945) - 3677687..3678646 (-) 960 WP_141539446.1 dipeptidase -
  VSY18_RS18950 (VSY18_18950) spoVS 3678669..3678929 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  VSY18_RS18955 (VSY18_18955) - 3679079..3679873 (-) 795 WP_048530450.1 TIGR00282 family metallophosphoesterase -
  VSY18_RS18960 (VSY18_18960) rny 3680038..3681603 (-) 1566 WP_000099355.1 ribonuclease Y -
  VSY18_RS18965 (VSY18_18965) recA 3682085..3683116 (-) 1032 WP_048530451.1 recombinase RecA Machinery gene
  VSY18_RS18970 (VSY18_18970) cinA 3683259..3684497 (-) 1239 WP_048530452.1 competence/damage-inducible protein CinA Machinery gene
  VSY18_RS18975 (VSY18_18975) pgsA 3684518..3685096 (-) 579 WP_001052973.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  VSY18_RS18980 (VSY18_18980) - 3685160..3686086 (-) 927 WP_270672838.1 helix-turn-helix domain-containing protein -
  VSY18_RS18985 (VSY18_18985) - 3686108..3686893 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  VSY18_RS18990 (VSY18_18990) - 3687033..3687281 (-) 249 WP_048530457.1 DUF3243 domain-containing protein -
  VSY18_RS18995 (VSY18_18995) ymfI 3687357..3688070 (-) 714 WP_247998488.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37254.22 Da        Isoelectric Point: 4.9868

>NTDB_id=926329 VSY18_RS18965 WP_048530451.1 3682085..3683116(-) (recA) [Bacillus albus strain YK87]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERRVSTVSSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFF
IREHHGISEDSGAEGAEDSNLLD

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=926329 VSY18_RS18965 WP_048530451.1 3682085..3683116(-) (recA) [Bacillus albus strain YK87]
ATGAGTGATCGTCAAGCAGCGTTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCAATTATGAAATT
AGGAGAACAAGCGGAGCGTAGAGTTTCTACAGTTTCTAGTGGCTCTTTAGCACTTGATGTGGCATTAGGGGTAGGCGGAT
ACCCACGTGGCCGTATTATCGAAATTTATGGACCTGAAAGTTCAGGTAAAACAACAGTTTCATTACATGCAATTGCAGAA
GTACAACGTCAAGGTGGACAAGCGGCGTTCATTGACGCGGAGCATGCAATGGATCCTGTATATGCACAAAAATTAGGTGT
TAATATCGATGAATTACTATTATCACAACCTGATACAGGGGAGCAAGGTTTAGAAATCGCAGAAGCACTTGTACGAAGTG
GCGCGGTTGATATTATCGTAATTGACTCTGTAGCAGCTCTTGTACCTAAAGCTGAGATCGAAGGAGACATGGGTGACTCA
CACGTAGGTCTACAAGCGCGTTTAATGTCTCAAGCGCTTCGTAAACTTTCAGGTGCAATTAATAAATCAAAAACAATTGC
AATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGGAACCCAGAAACAACTCCAGGTGGTCGTGCGTTGA
AATTCTATTCAACTGTTCGTCTTGAAGTGCGTCGTGCTGAGCAATTAAAGCAAGGTAACGACATCGTTGGTAATAAAACA
AAAGTAAAAGTAGTTAAAAATAAAGTGGCACCACCATTCCGTGTTGCTGAAGTTGATATTATGTACGGAGAAGGTATTTC
AAGAGAAGGCGAAATCTTAGATATGGCTTCTGAACTTGATATCGTTCAAAAGAGTGGTGCATGGTACTCTTATAATGAAG
AACGCCTAGGACAAGGTCGAGAAAATTCGAAGCAGTTCTTAAAAGAAAATACGGATTTAAGAGAAGAAATTGCCTTCTTT
ATTCGTGAGCATCACGGAATTAGCGAAGATTCTGGTGCTGAAGGCGCGGAAGATTCAAATCTTCTTGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J9T4U3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.273

96.21

0.84
  recA Latilactobacillus sakei subsp. sakei 23K

76.758

95.335

0.732
  recA Streptococcus mitis SK321

68.529

99.125

0.679
  recA Streptococcus mutans UA159

67.449

99.417

0.671
  recA Streptococcus pyogenes NZ131

70.122

95.627

0.671
  recA Streptococcus pneumoniae Rx1

69.394

96.21

0.668
  recA Streptococcus pneumoniae R6

69.394

96.21

0.668
  recA Streptococcus pneumoniae TIGR4

69.394

96.21

0.668
  recA Streptococcus pneumoniae D39

69.394

96.21

0.668
  recA Streptococcus mitis NCTC 12261

69.394

96.21

0.668
  recA Lactococcus lactis subsp. cremoris KW2

67.665

97.376

0.659
  recA Neisseria gonorrhoeae strain FA1090

64.392

98.251

0.633
  recA Neisseria gonorrhoeae MS11

64.392

98.251

0.633
  recA Neisseria gonorrhoeae MS11

64.392

98.251

0.633
  recA Ralstonia pseudosolanacearum GMI1000

68.153

91.545

0.624
  recA Glaesserella parasuis strain SC1401

61.834

98.542

0.609
  recA Acinetobacter baumannii D1279779

62.202

97.959

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.804

95.044

0.606
  recA Helicobacter pylori 26695

62.31

95.918

0.598
  recA Helicobacter pylori strain NCTC11637

62.31

95.918

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

95.335

0.595
  recA Vibrio cholerae strain A1552

63.551

93.586

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.551

93.586

0.595
  recA Acinetobacter baylyi ADP1

63.043

93.878

0.592
  recA Pseudomonas stutzeri DSM 10701

61.875

93.294

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.392

92.128

0.566