Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   VSY18_RS18970 Genome accession   NZ_CP142670
Coordinates   3683259..3684497 (-) Length   412 a.a.
NCBI ID   WP_048530452.1    Uniprot ID   -
Organism   Bacillus albus strain YK87     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3678259..3689497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSY18_RS18950 (VSY18_18950) spoVS 3678669..3678929 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  VSY18_RS18955 (VSY18_18955) - 3679079..3679873 (-) 795 WP_048530450.1 TIGR00282 family metallophosphoesterase -
  VSY18_RS18960 (VSY18_18960) rny 3680038..3681603 (-) 1566 WP_000099355.1 ribonuclease Y -
  VSY18_RS18965 (VSY18_18965) recA 3682085..3683116 (-) 1032 WP_048530451.1 recombinase RecA Machinery gene
  VSY18_RS18970 (VSY18_18970) cinA 3683259..3684497 (-) 1239 WP_048530452.1 competence/damage-inducible protein CinA Machinery gene
  VSY18_RS18975 (VSY18_18975) pgsA 3684518..3685096 (-) 579 WP_001052973.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  VSY18_RS18980 (VSY18_18980) - 3685160..3686086 (-) 927 WP_270672838.1 helix-turn-helix domain-containing protein -
  VSY18_RS18985 (VSY18_18985) - 3686108..3686893 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  VSY18_RS18990 (VSY18_18990) - 3687033..3687281 (-) 249 WP_048530457.1 DUF3243 domain-containing protein -
  VSY18_RS18995 (VSY18_18995) ymfI 3687357..3688070 (-) 714 WP_247998488.1 elongation factor P 5-aminopentanone reductase -
  VSY18_RS19000 (VSY18_19000) yfmH 3688174..3689460 (-) 1287 WP_048530459.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45293.48 Da        Isoelectric Point: 5.4538

>NTDB_id=926330 VSY18_RS18970 WP_048530452.1 3683259..3684497(-) (cinA) [Bacillus albus strain YK87]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNNRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLGEELVYDEKALASISDYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQSVHEAQKLIQHTED
LILERVGEFFYGYDQEFLHNKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LATDGAVSQECARYLAENVRGLLKADIGVSFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLHLSGSRQQIRERSVKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=926330 VSY18_RS18970 WP_048530452.1 3683259..3684497(-) (cinA) [Bacillus albus strain YK87]
ATGAATGCTGAAATTATTGCGGTTGGAACAGAATTGTTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGGATTAACGTGTACTACCATACTGTAGTTGGGGATAATAACAATCGATTACAGCAGGCGATTG
AAGTTGCAGAAGAGCGCGCGGACATGCTTATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTGACGAAGGAAACA
ATAGCGTCTAGCTTAGGGGAAGAGCTTGTATATGATGAAAAGGCATTAGCATCAATAAGCGATTACTTTAAGCGTACAGG
TCGCGAATTCACGGAGAATAACAAAAAGCAGGCGCTCGTTTTAAATGGAGCAACTGTATTTGCGAATGATCACGGCATGG
CGCCTGGTATGGGGTTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAAGCCGATGTAT
GTAAGTTATGTAGAGCCCTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGCTTCTTCGGGAT
TGGGGAATCTCAATTAGAAGTGAAAGTTCAAGATTTGATTGATGGACAAACGAACCCGACAATCGCCCCGCTTGCGAATG
ATGGAGAAGTGACATTACGTTTAACTGCTAAGCATCAAAGTGTTCATGAAGCGCAGAAACTCATTCAGCATACGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGATCAAGAGTTTCTTCATAATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCAGAAAGTTTAACGGGTGGTCTCTTCGGGAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCCGTATTTAAAGGTGGTGTCATTTGCTATCATAATGATGTGAAGCAGCATGTTCTACATGTACCTGAGGAAGTG
TTGGCTACTGACGGTGCCGTTAGTCAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAGAGGATTATTAAAAGCGGATAT
CGGAGTTAGTTTCACTGGGGTAGCAGGACCAGATGCTTCAGAACATAAAGAGCCGGGAACAGTATTTGTTGGACTGGCGA
TTAAAGATGAACCAACTGTAGTCTTCCCTCTTCATTTAAGCGGAAGTCGTCAACAAATTAGAGAACGCTCAGTAAAATAT
GGATTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.738

100

0.587
  cinA Streptococcus mitis SK321

47.733

100

0.485
  cinA Streptococcus pneumoniae TIGR4

47.494

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.017

100

0.478
  cinA Streptococcus pneumoniae R6

47.017

100

0.478
  cinA Streptococcus pneumoniae D39

46.778

100

0.476
  cinA Streptococcus mitis NCTC 12261

46.778

100

0.476
  cinA Streptococcus mutans UA159

45.813

98.544

0.451
  cinA Streptococcus suis isolate S10

42.063

91.748

0.386