Detailed information NTG0092273

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: OCV12_RS13580
• Genome accession: NZ_AP025506
• Coordinates: 3110876..3111916 (-)
• Length: 346 a.a.
• NCBI ID: WP_176680438.1
• Uniprot ID: -
• Organism: Vibrio pomeroyi strain LMG 20537
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3105876..3116916

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV12_RS13560	-	3108118..3108429 (-)	312	WP_261884875.1	hypothetical protein	-
OCV12_RS13565	tpx	3108790..3109296 (-)	507	WP_261884876.1	thiol peroxidase	-
OCV12_RS13570	-	3109379..3109657 (-)	279	WP_261884877.1	hypothetical protein	-
OCV12_RS13575	-	3109887..3110792 (+)	906	WP_261884878.1	transcriptional regulator	-
OCV12_RS13580	recA	3110876..3111916 (-)	1041	WP_176680438.1	recombinase RecA	Machinery gene
OCV12_RS13585	pncC	3112056..3112550 (-)	495	WP_261884879.1	nicotinamide-nucleotide amidase	-
OCV12_RS13590	mutS	3112675..3115236 (+)	2562	WP_261884880.1	DNA mismatch repair protein MutS	-
OCV12_RS13595	rpoS	3115371..3116351 (-)	981	WP_261884881.1	RNA polymerase sigma factor RpoS	Regulator

Sequence

Protein

• Length: 346 a.a.
• Molecular weight: 37342.82 Da
• Isoelectric Point: 4.8285

>NTDB_id=92273 OCV12_RS13580 WP_176680438.1 3110876..3111916(-) (recA) [Vibrio pomeroyi strain LMG 20537]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNE
TRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYKGDKIGQGKANAGKYLRENPEVALEIDT
KLRELLLTPAVLEEKDVEQEEENEEL

Nucleotide

• Length: 1041 bp

>NTDB_id=92273 OCV12_RS13580 WP_176680438.1 3110876..3111916(-) (recA) [Vibrio pomeroyi strain LMG 20537]
ATGGACGAGAATAAACAAAAAGCGTTAGCCGCAGCCCTTGGTCAGATTGAAAAGCAATTTGGTAAAGGTTCTATCATGCG
TCTTGGTGATAACCGCACAATGGACGTAGAAACTATTTCTACTGGTTCTCTATCTCTAGATATCGCACTAGGTGCTGGTG
GCCTACCGATGGGACGTATCGTAGAAGTTTACGGTCCAGAATCATCAGGTAAAACAACGTTAACGCTTGAGCTTATTGCT
GCAGCACAAAAAGTTGGCAAGACGTGTGCTTTCGTTGATGCGGAACACGCACTAGACCCTATCTACGCTCAAAAGCTTGG
TGTTGATATCGATGCGCTTCTTGTTTCTCAACCAGACACTGGTGAGCAAGCACTAGAAATCTGTGATGCACTGGCTCGTT
CAGGTGCAATCGATGTACTTGTTATTGACTCAGTAGCAGCACTAACACCAAAAGCAGAAATCGAAGGCGAAATGGGCGAT
AGCCACATGGGTCTTCAGGCTCGTATGCTTTCTCAAGCGATGCGTAAGCTAACTGGTAACCTAAAGCAGTCTAACTGTAT
GGCTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACCACAACTGGTGGTAACGCTC
TTAAGTTCTACGCATCTGTTCGTCTTGATATCCGCCGTACTGGTGCGATCAAAGATGGTGATGAAGTTGTTGGTAACGAA
ACGCGTATCAAGGTTGTTAAGAACAAGATTGCTGCACCGTTTAAACAAGCTGAAACTCAAATCCTATACGGCAAAGGCTT
CAACCGTGAAGGTGAGCTTATCGATTTAGGTGTTAAGAACAAGCTGGTAGAAAAAGCGGGCGCTTGGTACAGCTACAAGG
GCGATAAGATCGGCCAAGGTAAAGCTAACGCTGGTAAATACCTACGTGAGAACCCAGAAGTTGCTCTTGAGATCGACACT
AAACTTCGCGAGTTGCTACTAACTCCTGCTGTTCTTGAAGAGAAAGATGTAGAACAGGAAGAAGAAAACGAAGAGCTATA
A

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-267)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae strain A1552	89.97	95.087	0.855
recA	Vibrio cholerae O1 biovar El Tor strain E7946	89.97	95.087	0.855
recA	Pseudomonas stutzeri DSM 10701	76.133	95.665	0.728
recA	Acinetobacter baumannii D1279779	72.807	98.844	0.72
recA	Acinetobacter baylyi ADP1	71.676	100	0.717
recA	Glaesserella parasuis strain SC1401	67.045	100	0.682
recA	Neisseria gonorrhoeae MS11	67.241	100	0.676
recA	Neisseria gonorrhoeae MS11	67.241	100	0.676
recA	Neisseria gonorrhoeae strain FA1090	67.241	100	0.676
recA	Ralstonia pseudosolanacearum GMI1000	69.817	94.798	0.662
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	63.636	92.197	0.587
recA	Bacillus subtilis subsp. subtilis str. 168	62.928	92.775	0.584
recA	Streptococcus pneumoniae D39	61.92	93.353	0.578
recA	Streptococcus mitis SK321	61.92	93.353	0.578
recA	Streptococcus pneumoniae TIGR4	61.92	93.353	0.578
recA	Streptococcus pneumoniae Rx1	61.92	93.353	0.578
recA	Streptococcus pneumoniae R6	61.92	93.353	0.578
recA	Streptococcus mutans UA159	57.637	100	0.578
recA	Helicobacter pylori strain NCTC11637	61.538	93.931	0.578
recA	Helicobacter pylori 26695	61.231	93.931	0.575
recA	Streptococcus mitis NCTC 12261	61.61	93.353	0.575
recA	Latilactobacillus sakei subsp. sakei 23K	58.529	98.266	0.575
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	59.819	95.665	0.572
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	61.371	92.775	0.569
recA	Streptococcus pyogenes NZ131	60.308	93.931	0.566
recA	Lactococcus lactis subsp. cremoris KW2	59.443	93.353	0.555