Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OCV12_RS13595 Genome accession   NZ_AP025506
Coordinates   3115371..3116351 (-) Length   326 a.a.
NCBI ID   WP_261884881.1    Uniprot ID   -
Organism   Vibrio pomeroyi strain LMG 20537     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3110371..3121351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV12_RS13580 recA 3110876..3111916 (-) 1041 WP_176680438.1 recombinase RecA Machinery gene
  OCV12_RS13585 pncC 3112056..3112550 (-) 495 WP_261884879.1 nicotinamide-nucleotide amidase -
  OCV12_RS13590 mutS 3112675..3115236 (+) 2562 WP_261884880.1 DNA mismatch repair protein MutS -
  OCV12_RS13595 rpoS 3115371..3116351 (-) 981 WP_261884881.1 RNA polymerase sigma factor RpoS Regulator
  OCV12_RS13600 nlpD 3116449..3117363 (-) 915 WP_123284049.1 murein hydrolase activator NlpD -
  OCV12_RS13605 - 3117399..3118025 (-) 627 WP_017633213.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  OCV12_RS13610 surE 3118026..3118769 (-) 744 WP_176680440.1 5'/3'-nucleotidase SurE -
  OCV12_RS13615 truD 3118846..3119892 (-) 1047 WP_261884882.1 tRNA pseudouridine(13) synthase TruD -
  OCV12_RS13620 ispF 3119915..3120394 (-) 480 WP_261884883.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  OCV12_RS13625 ispD 3120397..3121098 (-) 702 WP_261884884.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 37246.48 Da        Isoelectric Point: 5.1506

>NTDB_id=92275 OCV12_RS13595 WP_261884881.1 3115371..3116351(-) (rpoS) [Vibrio pomeroyi strain LMG 20537]
MSISNAVTKEEFDLDQVTTEPEALGKAKRTVTKKTEAKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide


Download         Length: 981 bp        

>NTDB_id=92275 OCV12_RS13595 WP_261884881.1 3115371..3116351(-) (rpoS) [Vibrio pomeroyi strain LMG 20537]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTGACCAAGTAACCACGGAACCGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGTTGAAGTTACGTCTAAAAGCTTAGATGCCACTCAACTGT
ATCTAGGCGAAATTGGTTTCTCACCACTATTAACCGCAGAAGAAGAAGTGCTTTACGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCTCGTAAACGCATGATCGAAAGTAACCTGCGTTTGGTGGTAAAAATTTCTCGTCGTTATAGCAACCGTGGTTT
GGCACTTCTCGATCTAATCGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAATTTGACCCAGAGCGTGGCTTCC
GTTTTTCAACTTACGCAACATGGTGGATTCGTCAAACCATTGAACGTGCGTTGATGAATCAGACTCGCACTATCCGTTTG
CCAATTCATGTTGTGAAAGAGCTGAACATCTACCTACGTACTGCAAGAGAGCTATCACAAAAGCTTGATCACGAACCAAC
GGCAGAAGAAATTGCTTCTAAGCTAGATAAGCCGGTTGGTGATGTGAGTAAGATGCTTCGTTTAAACGAAAGAGTGAGCT
CTGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCAGACATCAACAATTCAGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCACTGATATTCTGGCTTGATGAACTGAATCCGAAGCAGAAAGAAGTGCT
TGCACGTCGATTTGGACTACTAGGCTATGAACCGTCAACGCTAGAAGAAGTTGGCCGTGAAATCAGCCTGACTCGTGAGC
GAGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGTGAGATTCTGATTAAGCAAGGTCTGAACATGGAAAACCTG
TTCAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

Sigma-70, region 4 (Sigma70_r4)

(255-308)

Sigma-70 region 3 (Sigma70_r3)

(167-240)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(49-82)

Sigma-70 region 2 (Sigma70_r2)

(87-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

81.437

100

0.834

Multiple sequence alignment